* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
removing exploded boost header source...
* installing the package to re-build vignettes
* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c bbc.cpp -o bbc.o
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::detail::dijkstra_dispatch2(const VertexListGraph&, typename boost::graph_traits::vertex_descriptor, DistanceMap, WeightMap, IndexMap, const Params&, ColorMap) [with VertexListGraph = boost::adjacency_list >, boost::property >, boost::no_property, boost::listS>, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, long unsigned int>, double, double&>, WeightMap = boost::adj_list_edge_property_map >, boost::edge_weight_t>, IndexMap = boost::vec_adj_list_vertex_id_map >, long unsigned int>, Params = boost::bgl_named_params >, boost::property >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map >, long unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, long unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, long unsigned int>, long unsigned int, long unsigned int&> >, boost::graph_visitor_t, boost::bgl_named_params > >, boost::vec_adj_list_vertex_id_map >, long unsigned int>, double, double&>, boost::vertex_distance_t, boost::bgl_named_params >, long unsigned int>, boost::vertex_index_t, boost::bgl_named_params >, boost::edge_weight_t>, boost::edge_weight_t, boost::no_property> > > >, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, long unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis$m_decreased' is used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c cliques.cpp -o cliques.o
cliques.cpp: In function 'void print_one_clique(oneCliqueType&)':
cliques.cpp:110: warning: comparison between signed and unsigned integer expressions
cliques.cpp: In function 'void print_all_cliques(allCliquesType&, char*)':
cliques.cpp:118: warning: comparison between signed and unsigned integer expressions
cliques.cpp: In function 'void extend_v2(Graph_ud&, std::vector >&, std::vector >&, int, int, int&, allCliquesType&)':
cliques.cpp:139: warning: 's' may be used uninitialized in this function
cliques.cpp:139: warning: 'pos' may be used uninitialized in this function
cliques.cpp:138: warning: 'fixp' may be used uninitialized in this function
cliques.cpp: At global scope:
cliques.cpp:115: warning: 'void print_all_cliques(allCliquesType&, char*)' defined but not used
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c clusteringCoef.cpp -o clusteringCoef.o
clusteringCoef.cpp: In function 'int findIndex(int, const std::vector >&)':
clusteringCoef.cpp:132: warning: comparison between signed and unsigned integer expressions
clusteringCoef.cpp: In function 'SEXPREC* clusteringCoefAppr(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
clusteringCoef.cpp:248: warning: 'w' may be used uninitialized in this function
clusteringCoef.cpp:248: warning: 'u' may be used uninitialized in this function
clusteringCoef.cpp: In function 'SEXPREC* graphGenerator(SEXPREC*, SEXPREC*, SEXPREC*)':
clusteringCoef.cpp:394: warning: 'w' may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c hcs.cpp -o hcs.o
hcs.cpp: In function 'void output_graph_labels(const V_Label&, const char*)':
hcs.cpp:27: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function 'void build_subgraph(Cluster&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:62: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function 'void remove_vertices(int, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:117: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function 'dst cluster_distance(const Graph_ud&, V_Label&, int, V_Label&)':
hcs.cpp:134: warning: comparison between signed and unsigned integer expressions
hcs.cpp:138: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function 'void adopt_singleton(const Graph_ud&, V_Label&, ClusterResult&)':
hcs.cpp:206: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function 'void remove_clusters(ClusterResult&, const Graph_ud&, const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:248: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function 'void HCS_internal(const Graph_ud&, V_Label&, ClusterResult&)':
hcs.cpp:288: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function 'SEXPREC* HCS_loop(Graph_ud&, V_Label&)':
hcs.cpp:363: warning: comparison between signed and unsigned integer expressions
hcs.cpp:393: warning: comparison between signed and unsigned integer expressions
hcs.cpp:397: warning: comparison between signed and unsigned integer expressions
hcs.cpp:353: warning: unused variable 'found_new_cluster'
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list, OutputIterator = std::back_insert_iterator > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D96586$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D96586$D96551$m_value$D94348$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D96586$D96551$m_value$D94348$m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D96586$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D96586$D96551$m_value$D94348$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D96586$D96551$m_value$D94348$m_source' is used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
hcs.cpp: At global scope:
hcs.cpp:24: warning: 'void output_graph_labels(const V_Label&, const char*)' defined but not used
hcs.cpp:32: warning: 'void output_graph(const Graph_ud&, const char*)' defined but not used
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c incrConnComp.cpp -o incrConnComp.o
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:67: warning: comparison between signed and unsigned integer expressions
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c interfaces.cpp -o interfaces.o
interfaces.cpp: In function 'SEXPREC* BGL_articulation_points_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:310: warning: comparison between signed and unsigned integer expressions
interfaces.cpp: In function 'SEXPREC* BGL_astar_search_D(SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:405: warning: 'ansList' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator, std::allocator > > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D101116$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D101116$D101081$m_value$D81028$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D101116$D101081$m_value$D81028$m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D101116$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D101116$D101081$m_value$D81028$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D101116$D101081$m_value$D81028$m_source' is used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c layout.cpp -o layout.o
layout.cpp: In function 'SEXPREC* BGL_gursov_atun_layout(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
layout.cpp:219: warning: unused variable 'w'
layout.cpp:220: warning: unused variable 'h'
boostIncl/boost/graph/fruchterman_reingold.hpp: In function 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, DisplacementMap) [with Graph = boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, boost::simple_point, boost::simple_point&>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, boost::simple_point, boost::simple_point&> >, Cooling = boost::linear_cooling, DisplacementMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, boost::simple_point, boost::simple_point&>]':
boostIncl/boost/graph/fruchterman_reingold.hpp:366: instantiated from 'static void boost::detail::fr_force_directed_layout::run(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, boost::detail::error_property_not_found, const boost::bgl_named_params&) [with Graph = boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, boost::simple_point, boost::simple_point&>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, boost::simple_point, boost::simple_point&> >, Cooling = boost::linear_cooling, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
boostIncl/boost/graph/fruchterman_reingold.hpp:392: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, const boost::bgl_named_params&) [with Graph = boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, boost::simple_point, boost::simple_point&>, Dim = double, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
boostIncl/boost/graph/fruchterman_reingold.hpp:413: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim) [with Graph = IndexGraph, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, boost::simple_point, boost::simple_point&>, Dim = double]'
layout.cpp:187: instantiated from here
boostIncl/boost/graph/fruchterman_reingold.hpp:312: warning: suggest parentheses around assignment used as truth value
/usr/include/c++/4.1.0/ext/new_allocator.h: In function 'std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl&) [with Graph = boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property, boost::no_property> >, boost::property, boost::no_property, boost::listS>::config, Base = boost::undirected_graph_helper, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property, boost::no_property> >, boost::property, boost::no_property, boost::listS>::config>]':
/usr/include/c++/4.1.0/ext/new_allocator.h:104: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl&) [with Graph = boost::adjacency_list, boost::property >, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen, boost::property >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property, boost::property >, boost::no_property, boost::listS>::config, Base = boost::directed_graph_helper, boost::property >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property, boost::property >, boost::no_property, boost::listS>::config>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D107311$m_value' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, DistanceMatrix = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, VertexID = boost::vec_adj_list_vertex_id_map, boost::no_property> >, long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, DistanceZero = double]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis$m_decreased' is used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c mincut.cpp -o mincut.o
boostIncl/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel::discharge(typename boost::graph_traits::vertex_descriptor) [with Graph = boost::adjacency_list, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map, const boost::detail::edge_desc_impl&, long unsigned int, const boost::property, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, FlowValue = double]':
boostIncl/boost/graph/push_relabel_max_flow.hpp:340: warning: 'min_edge_iter$m_src' may be used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D80072$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D80072$D80037$m_value$D77668$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D80072$D80037$m_value$D77668$m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D80072$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D80072$D80037$m_value$D77668$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D80072$D80037$m_value$D77668$m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D94219$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D94219$D94184$m_value$D77668$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D94219$D94184$m_value$D77668$m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D94219$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D94219$D94184$m_value$D77668$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D94219$D94184$m_value$D77668$m_source' is used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c minST.cpp -o minST.o
minST.cpp: In function 'SEXPREC* BGL_PRIM_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
minST.cpp:99: warning: comparison between signed and unsigned integer expressions
minST.cpp:103: warning: comparison between signed and unsigned integer expressions
minST.cpp:93: warning: unused variable 'vlist'
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c ordering.cpp -o ordering.o
ordering.cpp: In function 'SEXPREC* BGL_king_ordering(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
ordering.cpp:172: warning: unused variable 'delta'
boostIncl/boost/graph/detail/adjacency_list.hpp: In member function 'void boost::detail::mmd_impl::eliminate(typename boost::graph_traits::vertex_descriptor) [with Graph = R_adjacency_list, DegreeMap = boost::iterator_property_map, long unsigned int>, int, int&>, InversePermutationMap = int*, PermutationMap = int*, SuperNodeMap = boost::iterator_property_map, long unsigned int>, int, int&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c shortestPath.cpp -o shortestPath.o
shortestPath.cpp: In function 'SEXPREC* BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
shortestPath.cpp:79: warning: unused variable 'j'
shortestPath.cpp: In function 'SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
shortestPath.cpp:180: warning: unused variable 'V'
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, DistanceZero = double]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D100267$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D100267$m_value' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis$m_decreased' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c sna.cpp -o sna.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'std::pair boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl&) [with Graph = boost::adjacency_list, boost::property >, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen, boost::property >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property, boost::property >, boost::no_property, boost::listS>::config, Base = boost::directed_graph_helper, boost::property >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property, boost::property >, boost::no_property, boost::listS>::config>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D101374$m_value' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, DistanceZero = double]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis$m_decreased' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D87946$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D87946$D87911$m_value$D86250$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D87946$D87911$m_value$D86250$m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D87946$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D87946$D87911$m_value$D86250$m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$D87946$D87911$m_value$D86250$m_source' is used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c transitive_closure.cpp -o transitive_closure.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'void boost::transitive_closure(const Graph&, GraphTC&, G_to_TC_VertexMap, VertexIndexMap) [with Graph = R_adjacency_list, GraphTC = R_adjacency_list, G_to_TC_VertexMap = boost::iterator_property_map, long unsigned int>, long unsigned int, long unsigned int&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp: In member function 'void boost::EdgeMutableGraphConcept::constraints() [with G = R_adjacency_list]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p$m_value' is used uninitialized in this function
g++ -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c wavefront.cpp -o wavefront.o
g++ -shared -L/usr/local/lib64 -o RBGL.so bbc.o cliques.o clusteringCoef.o hcs.o incrConnComp.o interfaces.o layout.o mincut.o minST.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o
** R
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** building package indices ...
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