Package: vsn

Version: 1.10.0

Command: /loc/biocbuild/1.8d/R/bin/R CMD check vsn_1.10.0.tar.gz

RetCode: 0

Time: 649.9 seconds

Status: OK

CheckDir: vsn.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.8d/Rpacks/vsn.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'vsn/DESCRIPTION' ... OK
* this is package 'vsn' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'vsn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating vsn-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating vsn-manual.tex ... OK
* checking vsn-manual.tex ... OK

* Installing *source* package 'vsn' ...
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c vsn.c -o vsn.o
gcc -shared -L/usr/local/lib -o vsn.so vsn.o   
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'vsn'
     Formats: text html latex example 
  getIntensityMatrix                text    html    latex   example
  kidney                            text    html    latex   example
  lymphoma                          text    html    latex   example
  meanSdPlot                        text    html    latex   example
  nchoosek                          text    html    latex   example
  normalize.AffyBatch.vsn           text    html    latex   example
  sagmbSimulateData                 text    html    latex   example
  vsn                               text    html    latex   example
  vsnPlotPar                        text    html    latex   example
  vsnh                              text    html    latex   example
** building package indices ...
* DONE (vsn)