* checking for file 'ScISI/DESCRIPTION' ... OK
* preparing 'ScISI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'ScISI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: Ruuid
Loading required package: GO
Loading required package: GOstats
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: RBGL
Loading required package: xtable
Attaching package: 'xtable'
The following object(s) are masked from package:graph :
label
Loading required package: Biobase
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: multtest
Loading required package: Category
Loading required package: KEGG
Loading required package: hgu95av2
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: YEAST
Loading required package: xtable
** help
Warning messages:
1: incomplete final line found by readLines on './man/compBijection.Rd'
2: incomplete final line found by readLines on './man/compareComplex.Rd'
3: incomplete final line found by readLines on './man/getLocOrfs.Rd'
4: incomplete final line found by readLines on './man/rmByEvi.Rd'
5: incomplete final line found by readLines on './man/runAlignment.Rd'
>>> Building/Updating help pages for package 'ScISI'
Formats: text html latex example
Desc-methods text html latex
ID-methods text html latex
JaccardCoef text html latex example
ScISI text html latex example
ScISI2html text html latex example
ScISIverified text html latex example
arp23 text html latex example
arp23G text html latex example
arp23Orf text html latex example
arp23Y2HG text html latex example
calcGraphStats text html latex example
cfia text html latex example
cfiaOrf text html latex example
checkComplex text html latex example
checkSGN text html latex example
compBijection text html latex example
compareComplex text html latex example
createGODataFrame text html latex example
createGOMatrix text html latex example
createMipsDataFrame text html latex example
createMipsMatrix text html latex example
createYeastDataObj text html latex example
dataS text html latex example
eAt text html latex example
eAt2 text html latex example
edgeProp text html latex example
egEBI16112 text html latex example
expStats text html latex example
findSubComp text html latex example
gavin2mergeMG text html latex example
getAPMSData text html latex example
getGOInfo text html latex example
getLocOrfs text html latex example
getMipsInfo text html latex example
getURL-methods text html latex
graphSumStats text html latex example
ho2mergeMGG text html latex example
krogan2mergeMGGH text html latex example
locScISI text html latex example
mapping2SysG text html latex example
mappingG text html latex example
maximizeSimilarity text html latex example
meanDeg text html latex example
mergeBGMat text html latex example
mips2go text html latex example
nAt text html latex
nAtMap text html latex example
nucComp text html latex example
recCompSize text html latex example
redundantM text html latex example
rmByEvi text html latex example
runAlignment text html latex example
runCompareComplex text html latex example
subCompM text html latex example
sumStats text html latex example
unWantedComp text html latex example
xtraGO text html latex example
xtraGONodes text html latex example
yeastData-class text html latex example
** building package indices ...
* DONE (ScISI)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'ScISI_1.2.0.tar.gz'