Package: annotate

Version: 1.10.0

Command: D:\biocbld\1.8d\R\bin\R.exe CMD check annotate_1.10.0.tar.gz

RetCode: 0

Time: 178.4 seconds

Status: OK

CheckDir: annotate.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/annotate.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'annotate/DESCRIPTION' ... OK
* this is package 'annotate' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating annotate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annotate-manual.tex ... OK
* checking annotate-manual.tex ... OK

installing R.css in D:/biocbld/1.8d/Rpacks/annotate.Rcheck


---------- Making package annotate ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annotate'
     Formats: text html latex example chm 
  ACCNUMStats                       text    html    latex   example chm
  GO2heatmap                        text    html    latex   example chm
  GOTerms-class                     text    html    latex   example chm
  GOmnplot                          text    html    latex   example chm
  HTMLPage-class                    text    html    latex   example chm
  LL2homology                       text    html    latex   example chm
  PMIDAmat                          text    html    latex   example chm
  PWAmat                            text    html    latex   example chm
  UniGeneQuery                      text    html    latex   example chm
  accessionToUID                    text    html    latex   example chm
  buildChromLocation                text    html    latex   example chm
  buildPubMedAbst                   text    html    latex   example chm
  chromLocation-class               text    html    latex   example chm
  compatibleVersions                text    html    latex   example chm
  findNeighbors                     text    html    latex   example chm
  genbank                           text    html    latex   example chm
  genelocator                       text    html    latex   example chm
  getPMInfo                         text    html    latex   example chm
  getSYMBOL                         text    html    latex   example chm
  getSeq4Acc                        text    html    latex   example chm
  getTDRows                         text    html    latex           chm
  hgByChroms                        text    html    latex   example chm
  hgCLengths                        text    html    latex   example chm
  hgu95AProbLocs                    text    html    latex           chm
  hgu95Achroloc                     text    html    latex   example chm
  hgu95Achrom                       text    html    latex   example chm
  hgu95All                          text    html    latex   example chm
  hgu95Asym                         text    html    latex   example chm
  homoData-class                    text    html    latex   example chm
  htmlpage                          text    html    latex   example chm
  installDataPackage                text    html    latex   example chm
  locuslinkById                     text    html    latex   example chm
  locuslinkQuery                    text    html    latex   example chm
  makeAnchor                        text    html    latex   example chm
  neighborGeneFinder                text    html    latex   example chm
  p2LL                              text    html    latex   example chm
  pm.abstGrep                       text    html    latex   example chm
  pm.getabst                        text    html    latex   example chm
  pm.titles                         text    html    latex   example chm
  pmAbst2HTML                       text    html    latex   example chm
  pmid2MIAME                        text    html    latex   example chm
  pmidQuery                         text    html    latex   example chm
  probesByLL                        text    html    latex   example chm
  pubMedAbst-class                  text    html    latex   example chm
  pubmed                            text    html    latex   example chm
  readGEOAnn                        text    html    latex   example chm
  revString                         text    html    latex   example chm
  serializeEnv                      text    html    latex   example chm
  usedChromGenes                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm


Compile time: 0 minutes, 0 seconds
50	Topics
277	Local links
7	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm, 79,475 bytes
Compression decreased file by 118,029 bytes.
  adding MD5 sums

* DONE (annotate)