Using auto-selected zip options 'Biostrings-ZIPDATA=zip'
---------- Making package Biostrings ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making R_init_Biostrings.d from R_init_Biostrings.c
making alphabetFrequency.d from alphabetFrequency.c
making bbuf.d from bbuf.c
making ibuf.d from ibuf.c
making reverseComplement.d from reverseComplement.c
making shiftor.d from shiftor.c
making utils.d from utils.c
gcc -ID:/biocbld/1.8d/R/include -Wall -O2 -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -ID:/biocbld/1.8d/R/include -Wall -O2 -c alphabetFrequency.c -o alphabetFrequency.o
gcc -ID:/biocbld/1.8d/R/include -Wall -O2 -c bbuf.c -o bbuf.o
gcc -ID:/biocbld/1.8d/R/include -Wall -O2 -c ibuf.c -o ibuf.o
gcc -ID:/biocbld/1.8d/R/include -Wall -O2 -c reverseComplement.c -o reverseComplement.o
gcc -ID:/biocbld/1.8d/R/include -Wall -O2 -c shiftor.c -o shiftor.o
shiftor.c: In function `shiftor':
shiftor.c:224: warning: 'index' might be used uninitialized in this function
gcc -ID:/biocbld/1.8d/R/include -Wall -O2 -c utils.c -o utils.o
utils.c: In function `Biostrings_translate_charcpy_from_subset':
utils.c:261: warning: unused variable `b'
utils.c: In function `Biostrings_translate_charcpy_to_subset':
utils.c:344: warning: unused variable `b'
windres --include-dir D:/biocbld/1.8d/R/include -i Biostrings_res.rc -o Biostrings_res.o
gcc -shared -s -o Biostrings.dll Biostrings.def R_init_Biostrings.o alphabetFrequency.o bbuf.o ibuf.o reverseComplement.o shiftor.o utils.o Biostrings_res.o -LD:/biocbld/1.8d/R/bin -lR
... DLL made
installing DLL
installing R files
save image
Creating a new generic function for 'as.integer' in 'Biostrings'
Creating a new generic function for 'toString' in 'Biostrings'
Creating a new generic function for 'nchar' in 'Biostrings'
Creating a new generic function for 'as.matrix' in 'Biostrings'
Creating a new generic function for 'as.list' in 'Biostrings'
Warning message:
in the method signature for function 'BStringViews' no definition for class: "file" in: matchSignature(signature, fdef, where)
installing inst files
installing data files
installing man source files
installing indices
zipping data
installing help
>>> Building/Updating help pages for package 'Biostrings'
Formats: text html latex example chm
BString-class text html latex example chm
BStringViews-class text html latex example chm
Biostrings-internals text html latex chm
alphabetFrequency text html latex example chm
blosum50 text html latex example chm
matchPattern text html latex example chm
needwunsQS text html latex example chm
readFASTA text html latex example chm
reverseComplement text html latex example chm
yeastSEQCHR1 text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.8d\Rpacks\R.INSTALL\Biostrings\chm\Biostrings.chm
Compile time: 0 minutes, 0 seconds
11 Topics
200 Local links
1 Internet link
1 Graphic
Created d:\biocbld\1.8d\Rpacks\R.INSTALL\Biostrings\chm\Biostrings.chm, 31,821 bytes
Compression decreased file by 45,903 bytes.
adding MD5 sums
packaged installation of package 'Biostrings' as Biostrings_2.0.3.zip
* DONE (Biostrings)