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annaffy

1.4.1

Colin A. Smith		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK [ OK ]
Windows Server 2003 x86_64 OK  OK  OK 
Package: annaffy
Version: 1.4.1
Command: /home/biocbuild/1.8d/R/bin/R CMD check annaffy_1.4.1.tar.gz
RetCode: 0
Time: 138.5 seconds
Status: OK
CheckDir: annaffy.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/1.8d/Rpacks/annaffy.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'annaffy/DESCRIPTION' ... OK
* this is package 'annaffy' version '1.4.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating annaffy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annaffy-manual.tex ... OK
* checking annaffy-manual.tex ... OK

annaffy.Rcheck/00install.out:

* Installing *source* package 'annaffy' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: GO
Loading required package: KEGG
** help
 >>> Building/Updating help pages for package 'annaffy'
     Formats: text html latex example 
  aaf.character                     text    html    latex
  aaf.goterm                        text    html    latex
  aaf.handler                       text    html    latex
  aaf.integer                       text    html    latex
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  aafChromosome                     text    html    latex   example
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  aafDescription-class              text    html    latex
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  aafIntensity-class                text    html    latex
  aafList-class                     text    html    latex
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  aafLocusLink                      text    html    latex   example
  aafPathway-class                  text    html    latex
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  aafProbe-class                    text    html    latex
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  aafTable-class                    text    html    latex
  aafTable                          text    html    latex
  aafTableAnn                       text    html    latex
  aafTableFrame                     text    html    latex
  aafTableInt                       text    html    latex
  aafUniGene-class                  text    html    latex
  aafUniGene                        text    html    latex   example
  chkPkgs                           text    html    latex
  getCSS-methods                    text    html    latex
  getHTML-methods                   text    html    latex
  getTD-methods                     text    html    latex
  getText-methods                   text    html    latex
  getURL-methods                    text    html    latex
  is.annpkg                         text    html    latex   example
  selectorWidget                    text    html    latex
** building package indices ...
* DONE (annaffy)