Package: Biobase

Version: 1.10.1

Command: /home/biocbuild/1.8d/R/bin/R CMD build Biobase

RetCode: 0

Time: 13.4 seconds

Status: OK

PackageFile: Biobase_1.10.1.tar.gz

* checking for file 'Biobase/DESCRIPTION' ... OK
* preparing 'Biobase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Biobase' ...
** libs
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c envir.c -o envir.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c matchpt.c -o matchpt.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c Rinit.c -o Rinit.o
gcc -shared -L/usr/local/lib64 -o Biobase.so envir.o matchpt.o Rinit.o   
** R
** data
** inst
** save image
Loading required package: tools
Creating a new generic function for 'nrow' in 'Biobase'
Creating a new generic function for 'ncol' in 'Biobase'
** help
 >>> Building/Updating help pages for package 'Biobase'
     Formats: text html latex example 
  Aggregate                         text    html    latex   example
  Biobase-package                   text    html    latex
  abstract                          text    html    latex
  addVig2Menu                       text    html    latex   example
  annotation                        text    html    latex
  assayData                         text    html    latex
  biocReposList                     text    html    latex   example
  cache                             text    html    latex   example
  class.AnnotatedDataFrame          text    html    latex
  class.AssayData                   text    html    latex
  class.ExpressionSet               text    html    latex   example
  class.MIAME                       text    html    latex
  class.MultiSet                    text    html    latex   example
  class.SnpSet                      text    html    latex
  class.aggregator                  text    html    latex
  class.annotatedDataset            text    html    latex
  class.characterORmiame            text    html    latex
  class.container                   text    html    latex   example
  class.eSet                        text    html    latex   example
  class.exprList                    text    html    latex   example
  class.exprMatrix                  text    html    latex
  class.exprSet                     text    html    latex   example
  class.phenoData                   text    html    latex   example
  combine                           text    html    latex
  contents                          text    html    latex   example
  copyEnv                           text    html    latex   example
  copySubstitute                    text    html    latex   example
  createPackage                     text    html    latex   example
  data.aaMap                        text    html    latex   example
  data.eset                         text    html    latex   example
  data.geneData                     text    html    latex   example
  data.reporter                     text    html    latex   example
  data.sample.ExpressionSet         text    html    latex   example
  data.sample.eSet                  text    html    latex   example
  data.sample.exprSet.1             text    html    latex   example
  data.sample.exprSet               text    html    latex   example
  defunct                           text    html    latex
  description                       text    html    latex
  dims                              text    html    latex
  dumpPackTxt                       text    html    latex   example
  esApply                           text    html    latex   example
  exprs                             text    html    latex
  featureNames                      text    html    latex
  getPkgVigs                        text    html    latex   example
  internals                         text    html    latex
  isUnique                          text    html    latex   example
  matchpt                           text    html    latex   example
  multiassign                       text    html    latex   example
  note                              text    html    latex   example
  notes                             text    html    latex
  openPDF                           text    html    latex   example
  openVignette                      text    html    latex   example
  package.version                   text    html    latex   example
  phenoData                         text    html    latex
  read.MIAME                        text    html    latex   example
  read.exprSet                      text    html    latex   example
  read.phenoData                    text    html    latex   example
  reporterInfo                      text    html    latex
  reverseSplit                      text    html    latex   example
  rowQ                              text    html    latex   example
  storageMode                       text    html    latex
  strbreak                          text    html    latex   example
  testBioCConnection                text    html    latex   example
  updateOldESet                     text    html    latex   example
** building package indices ...
Warning: 'eset' is deprecated.
Use 'sample.exprSet.1' instead.
See help("Deprecated")
* DONE (Biobase)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'Biobase_1.10.1.tar.gz'