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| Package 8/172 | OS | Arch | BUILD | CHECK | BUILD BIN |
affyio1.0.0Benjamin Milo Bolstad | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | [ OK ] | ||
| Linux (SUSE 10.0) | x86_64 | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | OK | OK |
| Package: affyio |
| Version: 1.0.0 |
| Command: /loc/biocbuild/1.8d/R/bin/R CMD check affyio_1.0.0.tar.gz |
| RetCode: 0 |
| Time: 45.5 seconds |
| Status: OK |
| CheckDir: affyio.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/1.8d/Rpacks/affyio.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'affyio/DESCRIPTION' ... OK * this is package 'affyio' version '1.0.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'affyio' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating affyio-Ex.R ... OK * checking examples ... OK * creating affyio-manual.tex ... OK * checking affyio-manual.tex ... OK
affyio.Rcheck/00install.out:
* Installing *source* package 'affyio' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c read_abatch.c -o read_abatch.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c read_bpmap.c -o read_bpmap.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c read_cdf_xda.c -o read_cdf_xda.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -g -O2 -std=gnu99 -c read_cdffile2.c -o read_cdffile2.o
gcc -G -L/usr/local/lib -o affyio.so read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o -lz
** R
** save image
** help
>>> Building/Updating help pages for package 'affyio'
Formats: text html latex example
check.cdf.type text html latex
read.cdffile.list text html latex
read.celfile.header text html latex
read.celfile.probeintensity.matri text html latex
** building package indices ...
* DONE (affyio)