arrayQualityMetrics
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see arrayQualityMetrics.
Quality metrics report for microarray data sets
Bioconductor version: 3.7
This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.
Author: Audrey Kauffmann, Wolfgang Huber
Maintainer: Mike Smith <mike.smith at embl.de>
citation("arrayQualityMetrics")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("arrayQualityMetrics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("arrayQualityMetrics")
Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output | R Script | |
Introduction: microarray quality assessment with arrayQualityMetrics | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel |
Version | 3.36.0 |
In Bioconductor since | BioC 2.1 (R-2.6) (16.5 years) |
License | LGPL (>= 2) |
Depends | |
Imports | affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML |
System Requirements | |
URL | |
Bug Reports | https://github.com/grimbough/arrayQualityMetrics/issues |
See More
Suggests | ALLMLL, CCl4, BiocStyle, knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | EGAD |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | arrayQualityMetrics_3.36.0.tar.gz |
Windows Binary | arrayQualityMetrics_3.36.0.zip |
Mac OS X 10.11 (El Capitan) | arrayQualityMetrics_3.36.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/arrayQualityMetrics |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/arrayQualityMetrics |
Package Short Url | https://bioconductor.org/packages/arrayQualityMetrics/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |