EGAD
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see EGAD.
Extending guilt by association by degree
Bioconductor version: 3.7
The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.
Author: Sara Ballouz [aut, cre], Melanie Weber [aut, ctb], Paul Pavlidis [aut], Jesse Gillis [aut, ctb]
Maintainer: Sara Ballouz <sballouz at cshl.edu>
citation("EGAD")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EGAD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EGAD")
"EGAD user guide" | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | FunctionalGenomics, FunctionalPrediction, GenePrediction, GraphAndNetwork, Network, NetworkEnrichment, Software, SystemsBiology |
Version | 1.8.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | GPL-2 |
Depends | R (>= 3.3) |
Imports | gplots, Biobase, GEOquery, limma, arrayQualityMetrics, impute, RColorBrewer, zoo, igraph, plyr, Matrix, MASS, RCurl, affy |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EGAD_1.8.0.tar.gz |
Windows Binary | EGAD_1.8.0.zip |
Mac OS X 10.11 (El Capitan) | EGAD_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EGAD |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EGAD |
Package Short Url | https://bioconductor.org/packages/EGAD/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |