To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see clusterProfiler.

statistical analysis and visualization of functional profiles for genes and gene clusters

Bioconductor version: 3.4

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu [aut, cre], Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

HTML	R Script	Statistical analysis and visualization of functional profiles for genes and gene clusters
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization
Version	3.2.14
In Bioconductor since	BioC 2.8 (R-2.13) (6 years)
License	Artistic-2.0
Depends	R (>= 3.3.1), DOSE(>= 3.0.1)
Imports	AnnotationDbi, ggplot2, GO.db, GOSemSim(>= 2.0.0), IRanges, magrittr, methods, plyr, qvalue, stats, stats4, tidyr, utils
LinkingTo
Suggests	AnnotationHub, BiocStyle, GSEABase, KEGG.db, knitr, org.Hs.eg.db, pathview, ReactomePA, testthat, topGO
SystemRequirements
Enhances
URL	https://guangchuangyu.github.io/clusterProfiler
BugReports	https://github.com/GuangchuangYu/clusterProfiler/issues
Depends On Me
Imports Me	bioCancer, debrowser, eegc, LINC, MoonlightR, TCGAbiolinks
Suggests Me	ChIPseeker, DOSE, GOSemSim, isomiRs, ReactomePA
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	clusterProfiler_3.2.14.tar.gz
Windows Binary	clusterProfiler_3.2.14.zip
Mac OS X 10.9 (Mavericks)	clusterProfiler_3.2.14.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report	Download Stats

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