To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bioCancer")

In most cases, you don't need to download the package archive at all.

bioCancer

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see bioCancer.

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: 3.4

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("bioCancer")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bioCancer")

HTML	R Script	bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis
PDF		Reference Manual
Text		NEWS
Text		LICENSE

biocViews	DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.4 (R-3.3) (0.5 years)
License	AGPL-3 \| file LICENSE
Depends	magrittr (>= 1.5), ggplot2 (>= 1.0.0), lubridate (>= 1.3.3), tidyr (>= 0.3.1), cgdsr, RCurl, XML
Imports	dplyr (>= 0.4.3), htmlwidgets, Biobase, geNetClassifier, AnnotationFuncs, org.Hs.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, plyr, grDevices, stats, utils, DiagrammeR (>= 0.7), visNetwork, car, MASS (>= 7.3), gridExtra (>= 2.0.0), AlgDesign (>= 1.1.7.3), psych (>= 1.4.8.11), GPArotation (>= 2014.11.1), wordcloud (>= 2.5), markdown (>= 0.7.4), knitr (>= 1.8), ggdendro (>= 0.1.17), broom (>= 0.3.7), pryr (>= 0.1), shiny (>= 0.13.2), jsonlite (>= 0.9.17), shinyAce (>= 0.1), DT (>= 0.1), readr (>= 0.1.1), data.tree (>= 0.2.1), yaml (>= 2.1.13), scales (>= 0.2.5), curl (>= 0.9.1), covr (>= 1.2.0), stringr (>= 1.0), tibble
LinkingTo
Suggests	BiocStyle, rmarkdown, testthat (>= 0.10.0)
SystemRequirements
Enhances
URL	http://kmezhoud.github.io/bioCancer
BugReports	https://github.com/kmezhoud/bioCancer/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	bioCancer_1.2.0.tar.gz
Windows Binary	bioCancer_1.2.0.zip
Mac OS X 10.9 (Mavericks)	bioCancer_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/bioCancer/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/bioCancer/
Package Downloads Report	Download Stats

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