SingleCellMultiModal
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see SingleCellMultiModal.
Integrating Multi-modal Single Cell Experiment datasets
Bioconductor version: 3.11
SingleCellMultiModal is an ExperimentHub package that serves multiple datasets obtained from GEO and other sources and represents them as MultiAssayExperiment objects. The current focus is on datasets that use new technologies such as scNMT and scM&T.
Author: Marcel Ramos [aut, cre] 
, Kelly Eckenrode [aut], Levi Waldron [aut]
Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>
citation("SingleCellMultiModal")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SingleCellMultiModal")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SingleCellMultiModal")| scNMT Mouse Gastrulation | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, GEO, ReproducibleResearch, SingleCellData |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.0.0), MultiAssayExperiment |
| Imports | AnnotationHub, BiocFileCache, ExperimentHub, rappdirs, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/waldronlab/SingleCellMultiModal/issues |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SingleCellMultiModal_1.0.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SingleCellMultiModal |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SingleCellMultiModal |
| Package Short Url | https://bioconductor.org/packages/SingleCellMultiModal/ |
| Package Downloads Report | Download Stats |