dagLogo

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see dagLogo.

dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory


Bioconductor version: 3.11

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Author: Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at duke.edu>

Citation (from within R, enter citation("dagLogo")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dagLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")
dagLogo Vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews SequenceMatching, Software, Visualization
Version 1.26.2
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>=2)
Depends R (>= 3.0.1)
Imports pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils, biomaRt, grid, motifStack, grImport2, methods
System Requirements
URL
See More
Suggests XML, BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dagLogo_1.26.2.tar.gz
Windows Binary dagLogo_1.26.2.zip
macOS 10.13 (High Sierra) dagLogo_1.26.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/dagLogo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dagLogo
Bioc Package Browser https://code.bioconductor.org/browse/dagLogo/
Package Short Url https://bioconductor.org/packages/dagLogo/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive