Back to Build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-09-07 15:40 -0400 (Sat, 07 Sep 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4711 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2205/2258 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
variancePartition 1.35.4 (landing page) Gabriel E. Hoffman
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
To the developers/maintainers of the variancePartition package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: variancePartition |
Version: 1.35.4 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 variancePartition |
StartedAt: 2024-09-06 19:58:14 -0400 (Fri, 06 Sep 2024) |
EndedAt: 2024-09-06 20:01:24 -0400 (Fri, 06 Sep 2024) |
EllapsedTime: 190.3 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 variancePartition ### ############################################################################## ############################################################################## * checking for file ‘variancePartition/DESCRIPTION’ ... OK * preparing ‘variancePartition’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: variancePartition * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘FAQ.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'FAQ.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘FAQ.Rmd’ --- re-building ‘additional_visualization.Rmd’ using rmarkdown --- finished re-building ‘additional_visualization.Rmd’ --- re-building ‘dream.Rmd’ using rmarkdown Quitting from lines 114-133 [dupCor] (dream.Rmd) Error: processing vignette 'dream.Rmd' failed with diagnostics: C stack usage 7970740 is too close to the limit --- failed re-building ‘dream.Rmd’ --- re-building ‘errors.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'errors.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘errors.Rmd’ --- re-building ‘mvtests.Rmd’ using rmarkdown Quitting from lines 79-95 [dream] (mvtests.Rmd) Error: processing vignette 'mvtests.Rmd' failed with diagnostics: C stack usage 7970740 is too close to the limit --- failed re-building ‘mvtests.Rmd’ --- re-building ‘rnd_effects.Rmd’ using rmarkdown --- finished re-building ‘rnd_effects.Rmd’ --- re-building ‘variancePartition.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'variancePartition.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘variancePartition.Rmd’ SUMMARY: processing the following files failed: ‘FAQ.Rmd’ ‘dream.Rmd’ ‘errors.Rmd’ ‘mvtests.Rmd’ ‘variancePartition.Rmd’ Error: Vignette re-building failed. Execution halted