Build/check report for BioC 3.20 - BUILD results for universalmotif on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4711
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for universalmotif on nebbiolo2

To the developers/maintainers of the universalmotif package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/universalmotif.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: universalmotif

Version: 1.23.5

Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 universalmotif

StartedAt: 2024-09-06 19:57:45 -0400 (Fri, 06 Sep 2024)

EndedAt: 2024-09-06 20:01:19 -0400 (Fri, 06 Sep 2024)

EllapsedTime: 214.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 universalmotif
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* checking for file ‘universalmotif/DESCRIPTION’ ... OK
* preparing ‘universalmotif’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘Introduction.Rmd’

--- re-building ‘IntroductionToSequenceMotifs.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'IntroductionToSequenceMotifs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘IntroductionToSequenceMotifs.Rmd’

--- re-building ‘MotifComparisonAndPvalues.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'MotifComparisonAndPvalues.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘MotifComparisonAndPvalues.Rmd’

--- re-building ‘MotifManipulation.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'MotifManipulation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘MotifManipulation.Rmd’

--- re-building ‘SequenceSearches.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'SequenceSearches.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘SequenceSearches.Rmd’

SUMMARY: processing the following files failed:
  ‘Introduction.Rmd’ ‘IntroductionToSequenceMotifs.Rmd’
  ‘MotifComparisonAndPvalues.Rmd’ ‘MotifManipulation.Rmd’
  ‘SequenceSearches.Rmd’

Error: Vignette re-building failed.
Execution halted