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This page was generated on 2024-09-07 15:40 -0400 (Sat, 07 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4711
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1995/2258HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spatialHeatmap 2.11.4  (landing page)
Jianhai Zhang
Snapshot Date: 2024-09-06 14:00 -0400 (Fri, 06 Sep 2024)
git_url: https://git.bioconductor.org/packages/spatialHeatmap
git_branch: devel
git_last_commit: 9af00d8
git_last_commit_date: 2024-07-29 09:58:18 -0400 (Mon, 29 Jul 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for spatialHeatmap on nebbiolo2

To the developers/maintainers of the spatialHeatmap package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialHeatmap.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: spatialHeatmap
Version: 2.11.4
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 spatialHeatmap
StartedAt: 2024-09-06 19:37:35 -0400 (Fri, 06 Sep 2024)
EndedAt: 2024-09-06 19:41:41 -0400 (Fri, 06 Sep 2024)
EllapsedTime: 246.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 spatialHeatmap
###
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* checking for file ‘spatialHeatmap/DESCRIPTION’ ... OK
* preparing ‘spatialHeatmap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘covisualize.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'covisualize.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘covisualize.Rmd’

--- re-building ‘custom_SVGs.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'custom_SVGs.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘custom_SVGs.Rmd’

--- re-building ‘spatialHeatmap.Rmd’ using rmarkdown
Error running filter pandoc-citeproc:
Could not find executable pandoc-citeproc
Error: processing vignette 'spatialHeatmap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘spatialHeatmap.Rmd’

SUMMARY: processing the following files failed:
  ‘covisualize.Rmd’ ‘custom_SVGs.Rmd’ ‘spatialHeatmap.Rmd’

Error: Vignette re-building failed.
Execution halted