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This page was generated on 2024-09-07 15:40 -0400 (Sat, 07 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4711
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1884/2258HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scTensor 2.15.0  (landing page)
Koki Tsuyuzaki
Snapshot Date: 2024-09-06 14:00 -0400 (Fri, 06 Sep 2024)
git_url: https://git.bioconductor.org/packages/scTensor
git_branch: devel
git_last_commit: 29f39d9
git_last_commit_date: 2024-04-30 11:11:19 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for scTensor on nebbiolo2

To the developers/maintainers of the scTensor package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTensor.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: scTensor
Version: 2.15.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 scTensor
StartedAt: 2024-09-06 19:25:43 -0400 (Fri, 06 Sep 2024)
EndedAt: 2024-09-06 19:27:28 -0400 (Fri, 06 Sep 2024)
EllapsedTime: 104.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 scTensor
###
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* checking for file ‘scTensor/DESCRIPTION’ ... OK
* preparing ‘scTensor’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘scTensor.Rmd’ using rmarkdown

Quitting from lines 95-100 [Access] (scTensor.Rmd)
Error: processing vignette 'scTensor.Rmd' failed with diagnostics:
file is not a database
--- failed re-building ‘scTensor.Rmd’

--- re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’

--- re-building ‘scTensor_2_Report_Interpretation.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_2_Report_Interpretation.Rmd’

--- re-building ‘scTensor_3_CCI_Simulation.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_3_CCI_Simulation.Rmd’

--- re-building ‘scTensor_4_Reanalysis.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_4_Reanalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘scTensor.Rmd’

Error: Vignette re-building failed.
Execution halted