| Back to Build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-09-07 15:39 -0400 (Sat, 07 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4711 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 654/2258 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epiregulon 1.1.2 (landing page) Xiaosai Yao
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
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To the developers/maintainers of the epiregulon package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiregulon.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: epiregulon |
| Version: 1.1.2 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL epiregulon |
| StartedAt: 2024-09-06 15:54:25 -0400 (Fri, 06 Sep 2024) |
| EndedAt: 2024-09-06 15:54:29 -0400 (Fri, 06 Sep 2024) |
| EllapsedTime: 4.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL epiregulon
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘epiregulon’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include' -I/usr/local/include -fpic -g -O2 -Wall -c aggregate_across_cells.cpp -o aggregate_across_cells.o
In file included from aggregate_across_cells.cpp:1:
/home/biocbuild/bbs-3.20-bioc/R/site-library/beachmat/include/Rtatami.h:6:10: fatal error: tatami_r/parallelize.hpp: No such file or directory
6 | #include "tatami_r/parallelize.hpp"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/bbs-3.20-bioc/R/etc/Makeconf:202: aggregate_across_cells.o] Error 1
ERROR: compilation failed for package ‘epiregulon’
* removing ‘/home/biocbuild/bbs-3.20-bioc/R/site-library/epiregulon’
* restoring previous ‘/home/biocbuild/bbs-3.20-bioc/R/site-library/epiregulon’