| Back to Build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-09-07 15:39 -0400 (Sat, 07 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4711 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2258 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodb 1.13.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
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To the developers/maintainers of the biodb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodb |
| Version: 1.13.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biodb |
| StartedAt: 2024-09-06 16:25:46 -0400 (Fri, 06 Sep 2024) |
| EndedAt: 2024-09-06 16:27:04 -0400 (Fri, 06 Sep 2024) |
| EllapsedTime: 78.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biodb ### ############################################################################## ############################################################################## * checking for file ‘biodb/DESCRIPTION’ ... OK * preparing ‘biodb’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘biodb.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'biodb.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘biodb.Rmd’ --- re-building ‘details.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'details.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘details.Rmd’ --- re-building ‘entries.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'entries.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘entries.Rmd’ --- re-building ‘new_connector.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'new_connector.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘new_connector.Rmd’ --- re-building ‘new_entry_field.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'new_entry_field.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘new_entry_field.Rmd’ SUMMARY: processing the following files failed: ‘biodb.Rmd’ ‘details.Rmd’ ‘entries.Rmd’ ‘new_connector.Rmd’ ‘new_entry_field.Rmd’ Error: Vignette re-building failed. Execution halted