| Back to Build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-09-07 15:40 -0400 (Sat, 07 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4711 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2100/2258 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TDbasedUFEadv 1.5.0 (landing page) Y-h. Taguchi
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
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To the developers/maintainers of the TDbasedUFEadv package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TDbasedUFEadv.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TDbasedUFEadv |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 TDbasedUFEadv |
| StartedAt: 2024-09-06 19:49:18 -0400 (Fri, 06 Sep 2024) |
| EndedAt: 2024-09-06 19:52:14 -0400 (Fri, 06 Sep 2024) |
| EllapsedTime: 175.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 TDbasedUFEadv ### ############################################################################## ############################################################################## * checking for file ‘TDbasedUFEadv/DESCRIPTION’ ... OK * preparing ‘TDbasedUFEadv’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Enrichment.Rmd’ using rmarkdown trying URL 'https://stringdb-downloads.org/download/protein.aliases.v11.5/9606.protein.aliases.v11.5.txt.gz' Content type 'application/octet-stream' length 21726816 bytes (20.7 MB) ================================================== downloaded 20.7 MB trying URL 'https://stringdb-downloads.org/download/protein.info.v11.5/9606.protein.info.v11.5.txt.gz' Content type 'application/octet-stream' length 1901833 bytes (1.8 MB) ================================================== downloaded 1.8 MB Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'Enrichment.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘Enrichment.Rmd’ --- re-building ‘Explanation_of_TDbasedUFEadv.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'Explanation_of_TDbasedUFEadv.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘Explanation_of_TDbasedUFEadv.Rmd’ --- re-building ‘How_to_use_TDbasedUFEadv.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'How_to_use_TDbasedUFEadv.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘How_to_use_TDbasedUFEadv.Rmd’ SUMMARY: processing the following files failed: ‘Enrichment.Rmd’ ‘Explanation_of_TDbasedUFEadv.Rmd’ ‘How_to_use_TDbasedUFEadv.Rmd’ Error: Vignette re-building failed. Execution halted