| Back to Build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-09-07 15:39 -0400 (Sat, 07 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4711 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 614/2258 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EasyCellType 1.7.0 (landing page) Ruoxing Li
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
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To the developers/maintainers of the EasyCellType package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EasyCellType.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: EasyCellType |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 EasyCellType |
| StartedAt: 2024-09-06 17:09:58 -0400 (Fri, 06 Sep 2024) |
| EndedAt: 2024-09-06 17:12:12 -0400 (Fri, 06 Sep 2024) |
| EllapsedTime: 134.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 EasyCellType ### ############################################################################## ############################################################################## * checking for file ‘EasyCellType/DESCRIPTION’ ... OK * preparing ‘EasyCellType’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘my-vignette.Rmd’ using rmarkdown * installing *source* package ‘EasyCellType’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EasyCellType) Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |===== | 7% | |========== | 14% | |=============== | 21% | |==================== | 29% | |========================= | 36% | |============================== | 43% | |=================================== | 50% | |======================================== | 57% | |============================================= | 64% | |================================================== | 71% | |======================================================= | 79% | |============================================================ | 86% | |================================================================= | 93% | |======================================================================| 100% 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'my-vignette.Rmd' failed with diagnostics: pandoc document conversion failed with error 83 --- failed re-building ‘my-vignette.Rmd’ SUMMARY: processing the following file failed: ‘my-vignette.Rmd’ Error: Vignette re-building failed. Execution halted