##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:aracne.networks.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings aracne.networks_1.31.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/aracne.networks.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘aracne.networks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘aracne.networks’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘aracne.networks’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 204.2Mb
  sub-directories of 1Mb or more:
    data  204.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 203.8 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  regulonblca.rda    8.2Mb    6.9Mb       xz
  regulonbrca.rda    5.7Mb    4.7Mb       xz
  reguloncesc.rda    9.6Mb    7.9Mb       xz
  reguloncoad.rda    7.0Mb    5.8Mb       xz
  regulonesca.rda    8.7Mb    7.0Mb       xz
  regulongbm.rda     9.2Mb    7.1Mb       xz
  regulonhnsc.rda    7.2Mb    6.0Mb       xz
  regulonkirc.rda    5.9Mb    4.9Mb       xz
  regulonkirp.rda    7.8Mb    6.5Mb       xz
  regulonlaml.rda    8.8Mb    7.0Mb       xz
  regulonlihc.rda    8.0Mb    6.7Mb       xz
  regulonluad.rda    6.8Mb    5.7Mb       xz
  regulonlusc.rda    7.7Mb    6.5Mb       xz
  regulonnet.rda    12.1Mb   10.1Mb       xz
  regulonov.rda     10.5Mb    8.6Mb       xz
  regulonpaad.rda    8.7Mb    7.1Mb       xz
  regulonpcpg.rda    9.9Mb    7.8Mb       xz
  regulonprad.rda    5.6Mb    4.7Mb       xz
  regulonread.rda    9.4Mb    7.6Mb       xz
  regulonsarc.rda    8.8Mb    7.2Mb       xz
  regulonstad.rda    9.7Mb    8.1Mb       xz
  regulontgct.rda    7.7Mb    6.3Mb       xz
  regulonthca.rda    5.2Mb    4.3Mb       xz
  regulonthym.rda    6.7Mb    5.3Mb       xz
  regulonucec.rda    8.2Mb    6.9Mb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/aracne.networks.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL aracne.networks
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘aracne.networks’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (aracne.networks)