Back to Build/check report for BioC 3.21 experimental data
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2024-10-28 02:38 -0400 (Mon, 28 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4649
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 292/429HostnameOS / ArchINSTALLBUILDCHECK
PepsNMRData 1.23.0  (landing page)
Manon Martin
Snapshot Date: 2024-10-27 20:28 -0400 (Sun, 27 Oct 2024)
git_url: https://git.bioconductor.org/packages/PepsNMRData
git_branch: devel
git_last_commit: e4f3785
git_last_commit_date: 2024-04-30 10:50:53 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  YES


CHECK results for PepsNMRData on nebbiolo1

To the developers/maintainers of the PepsNMRData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PepsNMRData
Version: 1.23.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:PepsNMRData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings PepsNMRData_1.23.0.tar.gz
StartedAt: 2024-10-28 00:28:35 -0400 (Mon, 28 Oct 2024)
EndedAt: 2024-10-28 00:32:37 -0400 (Mon, 28 Oct 2024)
EllapsedTime: 241.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: PepsNMRData.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:PepsNMRData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings PepsNMRData_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/PepsNMRData.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘PepsNMRData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMRData’ version ‘1.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMRData’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 54.2Mb
  sub-directories of 1Mb or more:
    data     47.2Mb
    extdata   6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 47.3 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/PepsNMRData.Rcheck/00check.log’
for details.


Installation output

PepsNMRData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL PepsNMRData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘PepsNMRData’ ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PepsNMRData)

Tests output


Example timings

PepsNMRData.Rcheck/PepsNMRData-Ex.timings

nameusersystemelapsed
Data_HS_sp0.2380.0610.303
Data_HU_sp0.2890.0610.350
FidData_HS0.1390.0130.152
FidData_HU0.1150.0050.120
FidInfo_HS0.0010.0000.001
FidInfo_HS_sp0.0000.0010.000
FidInfo_HU0.0010.0000.000
FidInfo_HU_sp0.0000.0010.000
FinalSpecta_HS0.0420.0000.041
FinalSpecta_HU0.0030.0010.003
Group_HS0.0010.0000.001
Group_HU0.0000.0000.001
PEPSNMRData-package0.0030.0020.006
RawFidData_HS0.0020.0020.005