Package: ListerEtAlBSseq

Version: 1.16.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:ListerEtAlBSseq.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings ListerEtAlBSseq_1.16.0.tar.gz

StartedAt: 2019-10-17 13:24:29 -0400 (Thu, 17 Oct 2019)

EndedAt: 2019-10-17 13:26:26 -0400 (Thu, 17 Oct 2019)

EllapsedTime: 117.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ListerEtAlBSseq.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:ListerEtAlBSseq.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings ListerEtAlBSseq_1.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/ListerEtAlBSseq.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ListerEtAlBSseq/DESCRIPTION’ ... OK
* this is package ‘ListerEtAlBSseq’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ListerEtAlBSseq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 659.0Mb
  sub-directories of 1Mb or more:
    data       2.9Mb
    extdata  656.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘ListerEtAlBSseq.rnw’
Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/ListerEtAlBSseq.rnw’
(Is a VignetteBuilder field missing?)
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/ListerEtAlBSseq.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL ListerEtAlBSseq
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘ListerEtAlBSseq’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ListerEtAlBSseq)

name	user	system	elapsed
H1.WGBS	0.260	0.007	1.919
IMR90.WGBS	0.986	0.004	1.701