Alicia Schep
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/motifmatchr |
| Branch: master |
| Last Commit: 9ebc443 |
| Last Changed Date: 2018-10-30 11:54:37 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:35:10 -0400 (Tue, 09 Apr 2019).
| Package 1024/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| motifmatchr 1.5.0 Alicia Schep
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
| Package: motifmatchr |
| Version: 1.5.0 |
| Command: rm -rf motifmatchr.buildbin-libdir && mkdir motifmatchr.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh motifmatchr_1.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R motifmatchr.buildbin-libdir |
| StartedAt: 2019-04-09 05:55:31 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:56:47 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 76.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: motifmatchr_1.5.0.tgz |
| PackageFileSize: 193.9 KiB |
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### Running command:
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### rm -rf motifmatchr.buildbin-libdir && mkdir motifmatchr.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh motifmatchr_1.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R motifmatchr.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=motifmatchr.buildbin-libdir motifmatchr_1.5.0.tar.gz'
>>>>>>>
* installing *source* package ‘motifmatchr’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c r_interface.cpp -o r_interface.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/scanner.cpp -o MOODS/scanner.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/motif_h.cpp -o MOODS/motif_h.o
MOODS/motif_h.cpp:256:25: warning: '&' within '^' [-Wbitwise-op-parentheses]
CODE = MASK & (CODE << SHIFT) ^ alphabet_map[s[ii + i + q - 1]];
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
MOODS/motif_h.cpp:256:25: note: place parentheses around the '&' expression to silence this warning
CODE = MASK & (CODE << SHIFT) ^ alphabet_map[s[ii + i + q - 1]];
^
( )
1 warning generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/motif_0.cpp -o MOODS/motif_0.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/moods_tools.cpp -o MOODS/moods_tools.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/moods_scan.cpp -o MOODS/moods_scan.o
MOODS/moods_scan.cpp:97:14: warning: unused variable 'done' [-Wunused-variable]
bool done = 0;
^
MOODS/moods_scan.cpp:252:33: warning: '&' within '|' [-Wbitwise-op-parentheses]
CODE = MASK & (CODE << SHIFT) | alphabet_map[seq[i+j+q-1]];
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
MOODS/moods_scan.cpp:252:33: note: place parentheses around the '&' expression to silence this warning
CODE = MASK & (CODE << SHIFT) | alphabet_map[seq[i+j+q-1]];
^
( )
2 warnings generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/moods_parsers.cpp -o MOODS/moods_parsers.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/moods_misc.cpp -o MOODS/moods_misc.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c MOODS/match_types.cpp -o MOODS/match_types.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o motifmatchr.so ./RcppExports.o ./r_interface.o ./MOODS/scanner.o ./MOODS/motif_h.o ./MOODS/motif_0.o ./MOODS/moods_tools.o ./MOODS/moods_scan.o ./MOODS/moods_parsers.o ./MOODS/moods_misc.o ./MOODS/match_types.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/motifmatchr.buildbin-libdir/motifmatchr/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (motifmatchr)
>>>>>>>
>>>>>>> FIXING LINKS FOR motifmatchr.buildbin-libdir/motifmatchr/libs//motifmatchr.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "motifmatchr.buildbin-libdir/motifmatchr/libs//motifmatchr.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "motifmatchr.buildbin-libdir/motifmatchr/libs//motifmatchr.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "motifmatchr.buildbin-libdir/motifmatchr/libs//motifmatchr.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "motifmatchr.buildbin-libdir/motifmatchr/libs//motifmatchr.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "motifmatchr.buildbin-libdir/motifmatchr/libs//motifmatchr.so"