Guangchuang Yu
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/ggtree |
| Branch: RELEASE_3_9 |
| Last Commit: 245e2ec |
| Last Changed Date: 2019-08-26 06:20:34 -0400 (Mon, 26 Aug 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:18 -0400 (Wed, 16 Oct 2019).
| Package 678/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ggtree 1.16.6 Guangchuang Yu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ggtree |
| Version: 1.16.6 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ggtree_1.16.6.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_1.16.6.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ggtree_1.16.6.zip && rm ggtree_1.16.6.tar.gz ggtree_1.16.6.zip |
| StartedAt: 2019-10-15 19:15:40 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:17:30 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 110.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ggtree_1.16.6.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_1.16.6.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ggtree_1.16.6.zip && rm ggtree_1.16.6.tar.gz ggtree_1.16.6.zip
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install for i386
* installing *source* package 'ggtree' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ggtree'
finding HTML links ... done
Date2decimal html
add-TREEDATA html
add_TREEINFO html
add_colorbar html
annotation_image html
applyLayoutDaylight html
as.polytomy html
collapse html
decimal2Date html
dotFun html
expand html
facet_data html
facet_labeller html
facet_plot html
facet_widths html
flip html
geom_aline html
geom_balance html
geom_cladelabel html
geom_cladelabel2 html
geom_hilight html
geom_hilight_encircle html
geom_label2 html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/geom_label2.Rd:52: file link 'geom_label' in package 'ggplot2' does not exist and so has been treated as a topic
geom_motif html
geom_nodelab html
geom_nodelab2 html
geom_nodepoint html
geom_point2 html
geom_range html
geom_rootedge html
geom_rootpoint html
geom_segment2 html
geom_strip html
geom_taxalink html
geom_text2 html
geom_tiplab html
geom_tiplab2 html
geom_tippoint html
geom_tree html
geom_tree2 html
geom_treescale html
get.path html
getNodeAngle.df html
getNodesBreadthFirst.df html
getSubtree html
getSubtree.df html
getSubtreeUnrooted html
getSubtreeUnrooted.df html
getTreeArcAngles html
get_balance_position html
get_clade_position html
get_heatmap_column_position html
get_taxa_name html
ggtree-ggproto html
ggtree html
gheatmap html
gzoom-methods html
gzoom.phylo html
identify html
inset html
layoutDaylight html
layoutEqualAngle html
msaplot html
multiplot html
nodebar html
nodeid html
nodepie html
open_tree html
phylopic html
range_format html
reexports html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:47: file link 'collapse' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:49: file link 'xlim' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:49: file link 'geom_label' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:51: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:55: file link 'read.beast' in package 'treeio' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:55: file link 'read.jtree' in package 'treeio' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:55: file link 'read.mrbayes' in package 'treeio' does not exist and so has been treated as a topic
revts html
rotate html
rotateTreePoints.df html
rotate_tree html
scaleClade html
scale_color-methods html
scale_x_ggtree html
set_hilight_legend html
stat_balance html
stat_hilight html
subview html
theme_inset html
theme_tree html
theme_tree2 html
update-TREE html
viewClade html
xlim_expand html
xlim_tree html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ggtree' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ggtree' as ggtree_1.16.6.zip
* DONE (ggtree)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ggtree' successfully unpacked and MD5 sums checked