Package: edge

Version: 2.16.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/edge_2.16.0.tar.gz && rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL edge_2.16.0.zip && rm edge_2.16.0.tar.gz edge_2.16.0.zip

StartedAt: 2019-10-15 20:16:10 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 20:17:13 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 62.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/edge_2.16.0.tar.gz && rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL edge_2.16.0.zip && rm edge_2.16.0.tar.gz edge_2.16.0.zip
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install for i386

* installing *source* package 'edge' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c edge-init.c -o edge-init.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c edgeKLODP.c -o edgeKLODP.o
edgeKLODP.c: In function 'odpScoreCluster':
edgeKLODP.c:11:19: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
   double *first, *middle;
                   ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/edge.buildbin-libdir/00LOCK-edge/00new/edge/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'edge'
    finding HTML links ... done
    apply_jackstraw                         html  
    finding level-2 HTML links ... done

    apply_qvalue                            html  
    apply_snm                               html  
    apply_sva                               html  
    betaCoef                                html  
    build_models                            html  
    build_study                             html  
    deFit-class                             html  
    deSet-class                             html  
    deSet                                   html  
    edge                                    html  
    endotoxin                               html  
    fitFull                                 html  
    fitNull                                 html  
    fit_models                              html  
    fullMatrix                              html  
    fullModel                               html  
    gibson                                  html  
    individual                              html  
    kidney                                  html  
    kl_clust                                html  
    lrt                                     html  
    nullMatrix                              html  
    nullModel                               html  
    odp                                     html  
    qvalueObj                               html  
    resFull                                 html  
    resNull                                 html  
    sType                                   html  
    show                                    html  
    summary                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'edge' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c edge-init.c -o edge-init.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c edgeKLODP.c -o edgeKLODP.o
edgeKLODP.c: In function 'odpScoreCluster':
edgeKLODP.c:11:19: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
   double *first, *middle;
                   ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/edge.buildbin-libdir/edge/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'edge' as edge_2.16.0.zip
* DONE (edge)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'edge' successfully unpacked and MD5 sums checked