Manuela Benary
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/cobindR |
| Branch: RELEASE_3_9 |
| Last Commit: bd9a310 |
| Last Changed Date: 2019-05-02 11:53:44 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:28:14 -0400 (Wed, 16 Oct 2019).
| Package 314/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cobindR 1.22.0 Manuela Benary
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: cobindR |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/cobindR_1.22.0.tar.gz && rm -rf cobindR.buildbin-libdir && mkdir cobindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cobindR.buildbin-libdir cobindR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL cobindR_1.22.0.zip && rm cobindR_1.22.0.tar.gz cobindR_1.22.0.zip |
| StartedAt: 2019-10-15 20:26:09 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:28:15 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 125.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/cobindR_1.22.0.tar.gz && rm -rf cobindR.buildbin-libdir && mkdir cobindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cobindR.buildbin-libdir cobindR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL cobindR_1.22.0.zip && rm cobindR_1.22.0.tar.gz cobindR_1.22.0.zip
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install for i386
* installing *source* package 'cobindR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'sequence' in package 'cobindR'
Creating a new generic function for 'path' in package 'cobindR'
Creating a new generic function for 'path<-' in package 'cobindR'
Creating a generic function for 'write' from package 'base' in package 'cobindR'
Creating a generic function for 'write.fasta' from package 'seqinr' in package 'cobindR'
** help
*** installing help indices
converting help for package 'cobindR'
finding HTML links ... done
SeqObj-class html
bg_binding_sites html
finding level-2 HTML links ... done
bg_pairs html
bg_sequence_origin html
bg_sequence_source html
bg_sequence_type html
bg_sequences html
binding_sites html
cobindRConfiguration html
cobindr-class html
cobindr-internal html
cobindr-package html
comment html
configuration-class html
configuration html
downstream html
experiment_description html
fdrThreshold html
find.pairs html
get.bindingsite.ranges html
get.pairs html
get.significant.pairs html
id html
location html
mart html
max_distance html
name html
pValue html
pairs html
pairs_of_interest html
path html
pfm html
pfm_path html
plot.detrending html
plot.gc html
plot.pairdistance html
plot.pairdistribution html
plot.positionprofile html
plot.positions html
plot.positions.simple html
plot.tfbs.heatmap html
plot.tfbs.venndiagram html
plot.tfbslogo html
predicted2pwm html
pseudocount html
rtfbs html
search.gadem html
search.pwm html
seqObj html
sequence html
sequence_origin html
sequence_source html
sequence_type html
sequences html
species html
testCpG html
threshold html
uid html
upstream html
write.bindingsites html
write.bindingsites.table html
write.pairs html
write.sequences html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'path'
Warning: multiple methods tables found for 'path<-'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'path'
Warning: multiple methods tables found for 'path<-'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cobindR' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'path'
Warning: multiple methods tables found for 'path<-'
* MD5 sums
packaged installation of 'cobindR' as cobindR_1.22.0.zip
* DONE (cobindR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'cobindR' successfully unpacked and MD5 sums checked