Package: TFARM

Version: 1.6.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TFARM.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings TFARM_1.6.0.tar.gz

StartedAt: 2019-10-16 07:31:32 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 07:34:21 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 168.8 seconds

RetCode: 0

Status:  OK

CheckDir: TFARM.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TFARM.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings TFARM_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/TFARM.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TFARM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TFARM' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TFARM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
rulesTF0 7.49   0.23    7.72
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
rulesTF0 6.52   0.07    6.59
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TFARM_1.6.0.tar.gz && rm -rf TFARM.buildbin-libdir && mkdir TFARM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFARM.buildbin-libdir TFARM_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TFARM_1.6.0.zip && rm TFARM_1.6.0.tar.gz TFARM_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 69754  100 69754    0     0   639k      0 --:--:-- --:--:-- --:--:--  674k

install for i386

* installing *source* package 'TFARM' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TFARM'
    finding HTML links ... done
    DELTA                                   html  
    IComp                                   html  
    IMP                                     html  
    IMP_Z                                   html  
    IPCA                                    html  
    I_c_2                                   html  
    MCF7_chr1                               html  
    TF_Imp                                  html  
    distribViz                              html  
    heatI                                   html  
    imp_FOSL2                               html  
    items                                   html  
    itemset                                 html  
    p_TFs                                   html  
    presAbs                                 html  
    r_FOSL2                                 html  
    r_TEAD4                                 html  
    r_noFOSL2                               html  
    rulesGen                                html  
    rulesTF                                 html  
    rulesTF0                                html  
    search_rule                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TFARM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TFARM' as TFARM_1.6.0.zip
* DONE (TFARM)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'TFARM' successfully unpacked and MD5 sums checked