Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:20:34 -0400 (Wed, 16 Oct 2019).
Package 1149/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
OrderedList 1.56.0 Claudio Lottaz
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: OrderedList |
Version: 1.56.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OrderedList.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings OrderedList_1.56.0.tar.gz |
StartedAt: 2019-10-16 05:45:36 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 05:46:38 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 62.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OrderedList.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OrderedList.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings OrderedList_1.56.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/OrderedList.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'OrderedList/DESCRIPTION' ... OK * this is package 'OrderedList' version '1.56.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'OrderedList' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'Biobase' 'methods' 'twilight' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Found the following apparent S3 methods exported but not registered: plot.OrderedList plot.listComparison plot.listComparisonOverlap plot.shuffledRandomScores print.OrderedList print.listComparison print.listComparisonOverlap print.shuffledRandomScores See section 'Registering S3 methods' in the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE NB: .First.lib is obsolete and will not be used in R >= 3.0.0 File 'OrderedList/R/a.R': .First.lib has wrong argument list 'libname, pkgname, where' Package startup functions should have two arguments with names starting with 'lib' and 'pkg', respectively. See section 'Good practice' in '?.onAttach'. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/OrderedList.Rcheck/00check.log' for details.
OrderedList.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OrderedList_1.56.0.tar.gz && rm -rf OrderedList.buildbin-libdir && mkdir OrderedList.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrderedList.buildbin-libdir OrderedList_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OrderedList_1.56.0.zip && rm OrderedList_1.56.0.tar.gz OrderedList_1.56.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 490k 100 490k 0 0 4867k 0 --:--:-- --:--:-- --:--:-- 5219k install for i386 * installing *source* package 'OrderedList' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'OrderedList' finding HTML links ... done OL.data html OL.result html OrderedList html check.test.args html compareLists html getOverlap html overlap html plot.OrderedList html prepareData html preparePermutations html print.OrderedList html scoreOrderComparison html scoreRankings html shuffledRandomScores html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'OrderedList' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'OrderedList' as OrderedList_1.56.0.zip * DONE (OrderedList) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'OrderedList' successfully unpacked and MD5 sums checked
OrderedList.Rcheck/examples_i386/OrderedList-Ex.timings
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OrderedList.Rcheck/examples_x64/OrderedList-Ex.timings
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