Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:33:34 -0400 (Wed, 16 Oct 2019).
Package 816/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
INSPEcT 1.14.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: INSPEcT |
Version: 1.14.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:INSPEcT.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings INSPEcT_1.14.0.tar.gz |
StartedAt: 2019-10-16 04:35:13 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 05:06:15 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 1862.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: INSPEcT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:INSPEcT.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings INSPEcT_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/INSPEcT.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'INSPEcT/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'INSPEcT' version '1.14.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'INSPEcT' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed makeSimModel 32.74 0.26 34.25 processingDelay 21.30 0.25 291.15 quantifyExpressionsFromTrCounts 15.20 0.07 15.26 newINSPEcT 13.94 0.40 317.11 compareSteadyNoNascent 9.04 0.38 9.42 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed makeSimModel 37.37 0.12 37.50 processingDelay 21.11 0.28 330.03 quantifyExpressionsFromTrCounts 16.82 0.03 16.86 newINSPEcT 15.67 0.25 338.11 compareSteadyNoNascent 7.31 0.17 7.48 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/INSPEcT_1.14.0.tar.gz && rm -rf INSPEcT.buildbin-libdir && mkdir INSPEcT.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=INSPEcT.buildbin-libdir INSPEcT_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL INSPEcT_1.14.0.zip && rm INSPEcT_1.14.0.tar.gz INSPEcT_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3804k 100 3804k 0 0 32.0M 0 --:--:-- --:--:-- --:--:-- 34.0M install for i386 * installing *source* package 'INSPEcT' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'INSPEcT' finding HTML links ... done AIC-INSPEcT-method html Extract html INSPEcT-class html finding level-2 HTML links ... done INSPEcT-shinyApps html INSPEcT html INSPEcT_diffsteady-class html INSPEcT_model-class html allcounts html chisqmodel html chisqtest html combine html compareSteady html compareSteadyNoNascent html dim-INSPEcT-method html featureNames-INSPEcT-method html featureWidths html geneClass html getModel html inHeatmap html labeledSF html libsizes html logLik html makeModelRates html makeSimDataset html makeSimModel html modelRates html modelSelection html modelingParams html nGenes html nTpts html newINSPEcT html plotGene html plotMA html processingDelay html quantifyExpressionsFromBAMs html quantifyExpressionsFromTrAbundance html quantifyExpressionsFromTrCounts html ratePvals html ratesFirstGuess html ratesFirstGuessVar html removeModel html rocCurve html rocThresholds html sfPlot html simData3rep_Nascent html simData3rep_NoNascent html simData4rep_Nascent html simData4rep_NoNascent html split html tpts html viewModelRates html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'INSPEcT' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'INSPEcT' as INSPEcT_1.14.0.zip * DONE (INSPEcT) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'INSPEcT' successfully unpacked and MD5 sums checked
INSPEcT.Rcheck/examples_i386/INSPEcT-Ex.timings
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INSPEcT.Rcheck/examples_x64/INSPEcT-Ex.timings
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