Package: HilbertVis

Version: 1.42.0

Command: rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HilbertVis.buildbin-libdir

StartedAt: 2019-10-16 08:45:47 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 08:46:04 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 17.3 seconds

RetCode: 0

Status:  OK

PackageFile: HilbertVis_1.42.0.tgz

PackageFileSize: 925.7 KiB

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### Running command:
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###   rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HilbertVis.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HilbertVis.buildbin-libdir HilbertVis_1.42.0.tar.gz'
>>>>>>> 

* installing *source* package ‘HilbertVis’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c hilbert.c -o hilbert.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c make_wiggle_vector.c -o make_wiggle_vector.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c shrink_vector.c -o shrink_vector.o
shrink_vector.c:76:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^
shrink_vector.c:76:20: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^~~
                   fabs
shrink_vector.c:76:49: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^
shrink_vector.c:76:49: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^~~
                                                fabs
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/HilbertVis.buildbin-libdir/00LOCK-HilbertVis/00new/HilbertVis/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertVis)


>>>>>>> 
>>>>>>> FIXING LINKS FOR HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs//HilbertVis.so"