Johannes Rainer
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/FamAgg |
| Branch: RELEASE_3_9 |
| Last Commit: cb15c14 |
| Last Changed Date: 2019-05-02 11:53:59 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:34:31 -0400 (Wed, 16 Oct 2019).
| Package 535/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FamAgg 1.12.0 Johannes Rainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: FamAgg |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/FamAgg_1.12.0.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.12.0.zip && rm FamAgg_1.12.0.tar.gz FamAgg_1.12.0.zip |
| StartedAt: 2019-10-15 21:02:43 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 21:03:46 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 63.7 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/FamAgg_1.12.0.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.12.0.zip && rm FamAgg_1.12.0.tar.gz FamAgg_1.12.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 250k 100 250k 0 0 2316k 0 --:--:-- --:--:-- --:--:-- 2459k
install for i386
* installing *source* package 'FamAgg' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'pedigree' in package 'FamAgg'
in method for 'countGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'countGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'generationsFrom' with signature '"pedigree"': no definition for class "pedigree"
in method for 'generationsFrom' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getChildren' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getChildren' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSiblings' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSiblings' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getAll' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAll' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getExternalMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getExternalMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationSexMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSexMatched' with signature '"pedigree"': no definition for class "pedigree"
** help
*** installing help indices
converting help for package 'FamAgg'
finding HTML links ... done
FABinTestResults html
FAData-analysis html
FAData html
FAGenIndexResults html
FAIncidenceRateResults html
FAKinGroupResults html
FAKinSumResults html
FAProbResults html
FAStdIncidenceRateResults html
Pedigree-utils html
defineControls html
plotting-functions html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FamAgg' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FamAgg' as FamAgg_1.12.0.zip
* DONE (FamAgg)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'FamAgg' successfully unpacked and MD5 sums checked