Patrick C.N. Martin
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/ChIPanalyser |
| Branch: RELEASE_3_9 |
| Last Commit: 750b092 |
| Last Changed Date: 2019-05-02 11:54:08 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:39:15 -0400 (Wed, 16 Oct 2019).
| Package 256/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChIPanalyser 1.6.0 Patrick C.N. Martin
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ChIPanalyser |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ChIPanalyser_1.6.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.6.0.zip && rm ChIPanalyser_1.6.0.tar.gz ChIPanalyser_1.6.0.zip |
| StartedAt: 2019-10-15 20:36:44 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:38:29 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 104.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ChIPanalyser_1.6.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.6.0.zip && rm ChIPanalyser_1.6.0.tar.gz ChIPanalyser_1.6.0.zip
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install for i386
* installing *source* package 'ChIPanalyser' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ChIPanalyser'
finding HTML links ... done
AllSitesAboveThreshold html
finding level-2 HTML links ... done
BPFrequency html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/BPFrequency.Rd:32: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/BPFrequency.Rd:34: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
BPFrequency_- html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/BPFrequency_-.Rd:41: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/BPFrequency_-.Rd:59: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/BPFrequency_-.Rd:60: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
ChIPanalyser-package html
DNASequenceLength html
DNASequenceLength_- html
GRList-class html
NoAccess html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/NoAccess.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
PFMFormat html
PFMFormat_ html
PWMThreshold html
PWMThreshold_- html
PWMpseudocount html
PWMpseudocount_- html
PositionFrequencyMatrix html
PositionFrequencyMatrix_- html
PositionWeightMatrix html
PositionWeightMatrix_- html
ScalingFactorPWM html
ScalingFactorPWM_- html
averageExpPWMScore html
backgroundSignal html
backgroundSignal_- html
boundMolecules html
boundMolecules_- html
chipMean html
chipMean_- html
chipSd html
chipSd_- html
chipSmooth html
chipSmooth_- html
computeChipProfile html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeChipProfile.Rd:19: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeChipProfile.Rd:22: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeChipProfile.Rd:92: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
computeGenomeWidePWMScore html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:23: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:34: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
computeOccupancy html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeOccupancy.Rd:72: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeOccupancy.Rd:74: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
computeOptimal html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeOptimal.Rd:24: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeOptimal.Rd:40: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeOptimal.Rd:45: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computeOptimal.Rd:87: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
computePWMScore html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computePWMScore.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computePWMScore.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computePWMScore.Rd:58: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/computePWMScore.Rd:59: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
data html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/data.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/data.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/data.Rd:33: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
genomicProfileParameters-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/genomicProfileParameters-class.Rd:90: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
genomicProfileParameters html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/genomicProfileParameters.Rd:63: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
maxPWMScore html
maxSignal html
maxSignal_- html
minPWMScore html
naturalLog html
naturalLog_- html
noOfSites html
noOfSites_- html
occupancyProfileParameters-class html
occupancyProfileParameters html
ploidy html
ploidy_- html
plotOccupancyProfile html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/plotOccupancyProfile.Rd:21: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/plotOccupancyProfile.Rd:27: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/plotOccupancyProfile.Rd:35: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/plotOccupancyProfile.Rd:40: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/plotOccupancyProfile.Rd:58: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
plotOptimalHeatMaps html
processingChIPseq html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/processingChIPseq.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/processingChIPseq.Rd:30: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/processingChIPseq.Rd:52: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
profileAccuracyEstimate html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/profileAccuracyEstimate.Rd:27: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpu6XauY/R.INSTALL1824515fc26/ChIPanalyser/man/profileAccuracyEstimate.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
removeBackground html
removeBackground_- html
searchSites html
stepSize html
stepSize_- html
strandRule html
strandRule_- html
whichstrand html
whichstrand_- html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ChIPanalyser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPanalyser' as ChIPanalyser_1.6.0.zip
* DONE (ChIPanalyser)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ChIPanalyser' successfully unpacked and MD5 sums checked