BiocNeighbors 1.2.0
Aaron Lun
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/BiocNeighbors |
| Branch: RELEASE_3_9 |
| Last Commit: f754c63 |
| Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BiocNeighbors_1.2.0.tar.gz && rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors_1.2.0.zip && rm BiocNeighbors_1.2.0.tar.gz BiocNeighbors_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 56104 100 56104 0 0 840k 0 --:--:-- --:--:-- --:--:-- 944k
install for i386
* installing *source* package 'BiocNeighbors' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c annoy.cpp -o annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from annoy.cpp:1:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c build_annoy.cpp -o build_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from build_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c distances.cpp -o distances.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_annoy.cpp -o find_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from find_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kmknn.cpp -o kmknn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c neighbor_queue.cpp -o neighbor_queue.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_annoy.cpp -o query_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from query_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_find_kmknn.cpp -o range_find_kmknn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_find_vptree.cpp -o range_find_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_query_kmknn.cpp -o range_query_kmknn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_query_vptree.cpp -o range_query_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c vptree.cpp -o vptree.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o init.o kmknn.o neighbor_queue.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o range_find_kmknn.o range_find_vptree.o range_query_kmknn.o range_query_vptree.o utils.o vptree.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocNeighbors.buildbin-libdir/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiocNeighbors'
finding HTML links ... done
AnnoyIndex html
AnnoyParam html
BiocNeighborIndex html
BiocNeighborParam html
BiocNeighbors-algorithms html
BiocNeighbors-raw-index html
BiocNeighbors-ties html
HnswIndex html
HnswParam html
KmknnIndex html
KmknnParam html
VptreeIndex html
VptreeParam html
buildAnnoy html
buildHnsw html
buildIndex html
buildKmknn html
buildVptree html
find-methods html
finding level-2 HTML links ... done
findKNN html
findNeighbors html
query-methods html
queryKNN html
queryNeighbors html
rangeFind-methods html
rangeQuery-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BiocNeighbors' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c annoy.cpp -o annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from annoy.cpp:1:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c build_annoy.cpp -o build_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from build_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c distances.cpp -o distances.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_annoy.cpp -o find_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from find_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kmknn.cpp -o kmknn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c neighbor_queue.cpp -o neighbor_queue.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_annoy.cpp -o query_annoy.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
from annoy.h:17,
from query_annoy.cpp:2:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
(DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_find_kmknn.cpp -o range_find_kmknn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_find_vptree.cpp -o range_find_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_query_kmknn.cpp -o range_query_kmknn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c range_query_vptree.cpp -o range_query_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c vptree.cpp -o vptree.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o init.o kmknn.o neighbor_queue.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o range_find_kmknn.o range_find_vptree.o range_query_kmknn.o range_query_vptree.o utils.o vptree.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocNeighbors.buildbin-libdir/BiocNeighbors/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocNeighbors' as BiocNeighbors_1.2.0.zip
* DONE (BiocNeighbors)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BiocNeighbors' successfully unpacked and MD5 sums checked