Package: transite

Version: 1.2.1

Command: rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.2.1.tar.gz

StartedAt: 2019-10-16 10:23:11 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 10:24:48 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 96.9 seconds

RetCode: 0

Status:  OK

PackageFile: transite_1.2.1.zip

PackageFileSize: 1.516 MiB

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### Running command:
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###   rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.2.1.tar.gz
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install for i386

* installing *source* package 'transite' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c scoring.cpp -o scoring.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/transite.buildbin-libdir/00LOCK-transite/00new/transite/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'transite'
    finding HTML links ... done
    RBPMotif-class                          html  
    SpectrumScore-class                     html  
    calculateKmerEnrichment                 html  
    calculateKmerScores                     html  
    calculateLocalConsistency               html  
    calculateMotifEnrichment                html  
    calculateTranscriptMC                   html  
    checkKmers                              html  
    computeKmerEnrichment                   html  
    computeMotifScore                       html  
    createKmerMotif                         html  
    createMatrixMotif                       html  
    drawVolcanoPlot                         html  
    empiricalEnrichmentMeanCDF              html  
    ge                                      html  
    generateIUPACByKmers                    html  
    generateIUPACByMatrix                   html  
    generateKmers                           html  
    generateKmersFromIUPAC                  html  
    generatePermutedEnrichments             html  
    geometricMean                           html  
    getMotifById                            html  
    getMotifByRBP                           html  
    getMotifs                               html  
    getPPM                                  html  
    homopolymerCorrection                   html  
    initIUPAClookupTable                    html  
    kmers.enrichment                        html  
    lookupKmerScores                        html  
    motifs                                  html  
    motifsMetaInfo                          html  
    pCombine                                html  
    permTestGeometricMean                   html  
    runKmerSPMA                             html  
    runKmerTSMA                             html  
    runMatrixSPMA                           html  
    runMatrixTSMA                           html  
    scoreSequences                          html  
    scoreSpectrum                           html  
    scoreTranscripts                        html  
    scoreTranscriptsSingleMotif             html  
    setMotifs                               html  
    spectrumClassifier                      html  
    subdivideData                           html  
    toy.motif.matrix                        html  
    transite                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'transite' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c scoring.cpp -o scoring.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/transite.buildbin-libdir/transite/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'transite' as transite_1.2.1.zip
* DONE (transite)