Package: supraHex

Version: 1.21.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings supraHex_1.21.1.tar.gz

StartedAt: 2019-04-09 04:00:53 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 04:01:54 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 61.2 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings supraHex_1.21.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/supraHex.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.21.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL supraHex
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.072	0.014	0.087
sCompReorder	0.961	0.100	1.079
sDistance	0.127	0.011	0.139
sDmat	0.165	0.008	0.175
sDmatCluster	0.204	0.012	0.215
sDmatMinima	0.136	0.007	0.144
sHexDist	0.002	0.000	0.002
sHexGrid	0.002	0.001	0.002
sHexGridVariant	0.003	0.001	0.004
sHexPolygon	0.003	0.000	0.003
sInitial	0.003	0.000	0.003
sMapOverlay	0.216	0.016	0.237
sNeighAny	0.008	0.000	0.009
sNeighDirect	0.004	0.001	0.005
sTopology	0.018	0.005	0.022
sTrainBatch	0.045	0.002	0.051
sTrainSeq	0.430	0.019	0.463
sTrainology	0.002	0.001	0.002
sWriteData	0.190	0.012	0.204
visColoralpha	0.012	0.001	0.012
visColorbar	0.055	0.000	0.056
visColormap	0.012	0.001	0.012
visCompReorder	1.009	0.136	1.157
visDmatCluster	0.411	0.038	0.449
visDmatHeatmap	0.310	0.008	0.320
visHeatmap	0.155	0.001	0.158
visHeatmapAdv	0.771	0.007	0.779
visHexAnimate	0.002	0.000	0.003
visHexBarplot	0.533	0.056	0.592
visHexComp	0.161	0.004	0.166
visHexGrid	0.153	0.005	0.159
visHexMapping	1.588	0.127	1.764
visHexMulComp	1.175	0.060	1.255
visHexPattern	1.845	0.125	1.975
visKernels	0.014	0.008	0.023
visTreeBSclust	0.105	0.002	0.108
visTreeBootstrap	0.239	0.004	0.247
visVp	0.040	0.008	0.048