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BUILD BIN report for sitePath on tokay2

This page was generated on 2019-10-16 12:43:55 -0400 (Wed, 16 Oct 2019).

Package 1535/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sitePath 1.0.3
Chengyang Ji
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/sitePath
Branch: RELEASE_3_9
Last Commit: 837018a
Last Changed Date: 2019-06-25 08:23:36 -0400 (Tue, 25 Jun 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sitePath
Version: 1.0.3
Command: rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitePath.buildbin-libdir sitePath_1.0.3.tar.gz
StartedAt: 2019-10-16 10:14:37 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 10:16:04 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 86.3 seconds
RetCode: 0
Status:  OK  
PackageFile: sitePath_1.0.3.zip
PackageFileSize: 1.163 MiB

Command output

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###
### Running command:
###
###   rm -rf sitePath.buildbin-libdir && mkdir sitePath.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitePath.buildbin-libdir sitePath_1.0.3.tar.gz
###
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install for i386

* installing *source* package 'sitePath' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c exportFunc.cpp -o exportFunc.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c minEntropy.cpp -o minEntropy.o
minEntropy.cpp: In function 'Rcpp::ListOf > MinEntropy::updatedSegmentation(const Rcpp::ListOf >&, const segment&)':
minEntropy.cpp:383:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (unsigned int j = 0; j < aa.size(); ++j) {
                                        ^
minEntropy.cpp: In instantiation of 'MinEntropy::SearchTree::SearchTree(unsigned int, const Rcpp::ListOf >&) [with T = MinEntropy::Segmentor]':
minEntropy.cpp:429:28:   required from here
minEntropy.cpp:175:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (unsigned int j = 0; j < aa.size(); ++j) {
                                    ^
minEntropy.cpp: In instantiation of 'MinEntropy::SearchTree::SearchTree(unsigned int, const Rcpp::ListOf >&) [with T = MinEntropy::Amalgamator]':
minEntropy.cpp:430:28:   required from here
minEntropy.cpp:175:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c treemer.cpp -o treemer.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c util.cpp -o util.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o sitePath.dll tmp.def RcppExports.o exportFunc.o minEntropy.o treemer.o util.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sitePath.buildbin-libdir/00LOCK-sitePath/00new/sitePath/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sitePath'
    finding HTML links ... done
    addMSA                                  html  
    extractTips                             html  
    findSites                               html  
    h3n2_align                              html  
    h3n2_align_reduced                      html  
    h3n2_tree                               html  
    h3n2_tree_reduced                       html  
    plot.lineagePath                        html  
    plotSingleSite                          html  
    pre-assessment                          html  
    treemer                                 html  
    finding level-2 HTML links ... done

    zikv_align                              html  
    zikv_align_reduced                      html  
    zikv_tree                               html  
    zikv_tree_reduced                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sitePath' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c exportFunc.cpp -o exportFunc.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c minEntropy.cpp -o minEntropy.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c treemer.cpp -o treemer.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c util.cpp -o util.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o sitePath.dll tmp.def RcppExports.o exportFunc.o minEntropy.o treemer.o util.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sitePath.buildbin-libdir/sitePath/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sitePath' as sitePath_1.0.3.zip
* DONE (sitePath)