Package: seqCNA

Version: 1.30.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/seqCNA_1.30.0.tar.gz && rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCNA.buildbin-libdir seqCNA_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL seqCNA_1.30.0.zip && rm seqCNA_1.30.0.tar.gz seqCNA_1.30.0.zip

StartedAt: 2019-10-15 20:43:18 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 20:43:56 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 38.4 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/seqCNA_1.30.0.tar.gz && rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCNA.buildbin-libdir seqCNA_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL seqCNA_1.30.0.zip && rm seqCNA_1.30.0.tar.gz seqCNA_1.30.0.zip
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install for i386

* installing *source* package 'seqCNA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c seqCNA.cpp -o seqCNA.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o seqCNA.dll tmp.def seqCNA.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/seqCNA.buildbin-libdir/00LOCK-seqCNA/00new/seqCNA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqCNA'
    finding HTML links ... done
    SeqCNAInfo-class                        html  
    applyFilters                            html  
    applyThresholds                         html  
    plotCNProfile                           html  
    readSeqsumm                             html  
    runGLAD                                 html  
    runSeqnorm                              html  
    runSeqsumm                              html  
    seqCNA-package                          html  
    seqsumm_HCC1143                         html  
    writeCNProfile                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqCNA' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c seqCNA.cpp -o seqCNA.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o seqCNA.dll tmp.def seqCNA.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/seqCNA.buildbin-libdir/seqCNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqCNA' as seqCNA_1.30.0.zip
* DONE (seqCNA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'seqCNA' successfully unpacked and MD5 sums checked