Package: qsea

Version: 1.10.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/qsea_1.10.0.tar.gz && rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL qsea_1.10.0.zip && rm qsea_1.10.0.tar.gz qsea_1.10.0.zip

StartedAt: 2019-10-15 20:26:30 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 20:27:42 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 72.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/qsea_1.10.0.tar.gz && rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL qsea_1.10.0.zip && rm qsea_1.10.0.tar.gz qsea_1.10.0.zip
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install for i386

* installing *source* package 'qsea' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c lm.c -o lm.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'qsea'
    finding HTML links ... done
    addCNV                                  html  
    addContrast                             html  
    addCoverage                             html  
    addEnrichmentParameters                 html  
    addLibraryFactors                       html  
    addNewSamples                           html  
    addOffset                               html  
    addPatternDensity                       html  
    addSeqPref                              html  
    createQseaSet                           html  
    example                                 html  
    fitNBglm                                html  
    getPCA                                  html  
    isSignificant                           html  
    makeTable                               html  
    normMethod                              html  
    plotCNV                                 html  
    plotCoverage                            html  
    plotEnrichmentProfile                   html  
    plotPCA                                 html  
    qsea-package                            html  
    qseaGLM-class                           html  
    qseaPCA-class                           html  
    qseaSet-class                           html  
    regionStats                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'qsea' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c lm.c -o lm.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qsea.buildbin-libdir/qsea/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qsea' as qsea_1.10.0.zip
* DONE (qsea)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'qsea' successfully unpacked and MD5 sums checked