Robert Castelo
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/qpgraph |
| Branch: RELEASE_3_9 |
| Last Commit: db07b68 |
| Last Changed Date: 2019-05-02 11:53:11 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:22:20 -0400 (Wed, 16 Oct 2019).
| Package 1286/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| qpgraph 2.18.0 Robert Castelo
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: qpgraph |
| Version: 2.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/qpgraph_2.18.0.tar.gz && rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qpgraph.buildbin-libdir qpgraph_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.18.0.zip && rm qpgraph_2.18.0.tar.gz qpgraph_2.18.0.zip |
| StartedAt: 2019-10-15 20:25:38 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:27:49 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 131.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/qpgraph_2.18.0.tar.gz && rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qpgraph.buildbin-libdir qpgraph_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.18.0.zip && rm qpgraph_2.18.0.tar.gz qpgraph_2.18.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'qpgraph' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c cliquer.c -o cliquer.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5851:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int i = edges[k, 0];
^
qpgraph.c:5852:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int j = edges[k, 1];
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c reorder.c -o reorder.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qpgraph.buildbin-libdir/00LOCK-qpgraph/00new/qpgraph/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
Creating a generic function for 'det' from package 'Matrix' in package 'qpgraph'
** help
*** installing help indices
converting help for package 'qpgraph'
finding HTML links ... done
EcoliOxygen html
HMgmm-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpMvE68s/R.INSTALL22e47e0d4f50/qpgraph/man/HMgmm-class.Rd:65: file link 'dspMatrix-class' in package 'Matrix' does not exist and so has been treated as a topic
SsdMatrix-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpMvE68s/R.INSTALL22e47e0d4f50/qpgraph/man/SsdMatrix-class.Rd:14: file link 'dspMatrix-class' in package 'Matrix' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpMvE68s/R.INSTALL22e47e0d4f50/qpgraph/man/SsdMatrix-class.Rd:27: file link 'dspMatrix-class' in package 'Matrix' does not exist and so has been treated as a topic
UGgmm-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpMvE68s/R.INSTALL22e47e0d4f50/qpgraph/man/UGgmm-class.Rd:56: file link 'dspMatrix-class' in package 'Matrix' does not exist and so has been treated as a topic
eQTLcross-class html
eQTLnetwork-class html
eQTLnetworkEstimate html
eQTLnetworkEstimationParam-class html
graphParam-class html
qpAllCItests html
qpAnyGraph html
qpAvgNrr html
qpBoundary html
qpCItest html
qpClique html
qpCliqueNumber html
qpCov html
qpEdgeNrr html
qpFunctionalCoherence html
qpG2Sigma html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpMvE68s/R.INSTALL22e47e0d4f50/qpgraph/man/qpG2Sigma.Rd:51: file link 'rmvnorm' in package 'mvtnorm' does not exist and so has been treated as a topic
qpGenNrr html
qpGetCliques html
qpGraph-class html
qpGraphDensity html
qpHTF html
qpHist html
qpIPF html
qpImportNrr html
qpK2ParCor html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpMvE68s/R.INSTALL22e47e0d4f50/qpgraph/man/qpK2ParCor.Rd:17: file link 'cov2cor' in package 'stats' does not exist and so has been treated as a topic
qpNrr html
qpPAC html
qpPCC html
qpPRscoreThreshold html
qpPathWeight html
qpPlotMap html
qpPlotNetwork html
qpPrecisionRecall html
qpRndGraph html
qpRndWishart html
qpTopPairs html
qpUnifRndAssociation html
qpUpdateCliquesRemoving html
qpgraph-package html
** building package indices
** installing vignettes
'eQTLnetworks.Rnw'
'qpTxRegNet.Rnw'
'qpgraphSimulate.Rnw'
** testing if installed package can be loaded from temporary location
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
** testing if installed package can be loaded from final location
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'qpgraph' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c cliquer.c -o cliquer.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5851:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int i = edges[k, 0];
^
qpgraph.c:5852:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int j = edges[k, 1];
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c reorder.c -o reorder.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x64
** testing if installed package can be loaded
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
* MD5 sums
packaged installation of 'qpgraph' as qpgraph_2.18.0.zip
* DONE (qpgraph)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'qpgraph' successfully unpacked and MD5 sums checked