Magnus Astrand
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/plw |
| Branch: RELEASE_3_9 |
| Last Commit: 51ed488 |
| Last Changed Date: 2019-05-02 11:53:09 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:21:34 -0400 (Wed, 16 Oct 2019).
| Package 1226/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| plw 1.44.0 Magnus Astrand
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: plw |
| Version: 1.44.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/plw_1.44.0.tar.gz && rm -rf plw.buildbin-libdir && mkdir plw.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plw.buildbin-libdir plw_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL plw_1.44.0.zip && rm plw_1.44.0.tar.gz plw_1.44.0.zip |
| StartedAt: 2019-10-15 19:28:55 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:29:46 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 50.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/plw_1.44.0.tar.gz && rm -rf plw.buildbin-libdir && mkdir plw.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plw.buildbin-libdir plw_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL plw_1.44.0.zip && rm plw_1.44.0.tar.gz plw_1.44.0.zip
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install for i386
* installing *source* package 'plw' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function 'getPosteriorProbsAndSigmaHatStrata0':
SpecialFunctions.c:154:20: warning: variable 's2' set but not used [-Wunused-but-set-variable]
double kk,C,s0,s1,s2,temp0,aa;
^
SpecialFunctions.c:154:17: warning: variable 's1' set but not used [-Wunused-but-set-variable]
double kk,C,s0,s1,s2,temp0,aa;
^
SpecialFunctions.c:154:14: warning: variable 's0' set but not used [-Wunused-but-set-variable]
double kk,C,s0,s1,s2,temp0,aa;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c SpecialOptim.c -o SpecialOptim.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o plw.dll tmp.def SpecialFunctions.o SpecialOptim.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/plw.buildbin-libdir/00LOCK-plw/00new/plw/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'plw'
finding HTML links ... done
AffySpikeU95Subset html
HowToPLW html
estimateMVbeta html
estimateSigma html
estimateSigmaMV html
estimateSigmaMVbeta html
getKnots html
lmw html
logitT html
plw-package html
plw html
scaleParameterPlot html
statByIndex html
topRankSummary html
varHistPlot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'plw' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function 'getPosteriorProbsAndSigmaHatStrata0':
SpecialFunctions.c:154:20: warning: variable 's2' set but not used [-Wunused-but-set-variable]
double kk,C,s0,s1,s2,temp0,aa;
^
SpecialFunctions.c:154:17: warning: variable 's1' set but not used [-Wunused-but-set-variable]
double kk,C,s0,s1,s2,temp0,aa;
^
SpecialFunctions.c:154:14: warning: variable 's0' set but not used [-Wunused-but-set-variable]
double kk,C,s0,s1,s2,temp0,aa;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c SpecialOptim.c -o SpecialOptim.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o plw.dll tmp.def SpecialFunctions.o SpecialOptim.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/plw.buildbin-libdir/plw/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plw' as plw_1.44.0.zip
* DONE (plw)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'plw' successfully unpacked and MD5 sums checked