Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:20:54 -0400 (Wed, 16 Oct 2019).
Package 1186/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
pcaMethods 1.76.0 Henning Redestig
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | ![]() | ||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: pcaMethods |
Version: 1.76.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/pcaMethods_1.76.0.tar.gz && rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaMethods.buildbin-libdir pcaMethods_1.76.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.76.0.zip && rm pcaMethods_1.76.0.tar.gz pcaMethods_1.76.0.zip |
StartedAt: 2019-10-15 18:52:04 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 18:53:36 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 91.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/pcaMethods_1.76.0.tar.gz && rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaMethods.buildbin-libdir pcaMethods_1.76.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.76.0.zip && rm pcaMethods_1.76.0.tar.gz pcaMethods_1.76.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 172k 100 172k 0 0 596k 0 --:--:-- --:--:-- --:--:-- 611k install for i386 * installing *source* package 'pcaMethods' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c nipals.cpp -o nipals.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/pcaMethods.buildbin-libdir/00LOCK-pcaMethods/00new/pcaMethods/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'loadings' in package 'pcaMethods' ** help *** installing help indices converting help for package 'pcaMethods' finding HTML links ... done BPCA_dostep html BPCA_initmodel html DModX-pcaRes-method html Q2 html R2VX-pcaRes-method html R2cum-pcaRes-method html RnipalsPca html asExprSet html biplot-methods html bpca html center-pcaRes-method html centered-pcaRes-method html checkData html completeObs-nniRes-method html cvseg html cvstat-pcaRes-method html deletediagonals html derrorHierarchic html dim.pcaRes html errorHierarchic html fitted-methods html forkNlpcaNet html getHierarchicIdx html helix html kEstimate html kEstimateFast html leverage-pcaRes-method html lineSearch html linr html listPcaMethods html llsImpute html loadings-ANY-method html loadings-pcaRes-method html loadings.pcaRes html metaboliteData html metaboliteDataComplete html method-pcaRes-method html nObs-pcaRes-method html nP-pcaRes-method html nPcs-pcaRes-method html nVar-pcaRes-method html nipalsPca html nlpca html nmissing-pcaRes-method html nni html nniRes html optiAlgCgd html orth html pca html pcaMethods-deprecated html pcaMethods html pcaNet html pcaRes html plot.pcaRes html plotPcs html ppca html predict-methods html prep html rediduals-methods html repmat html robustPca html robustSvd html sDev-pcaRes-method html scaled-pcaRes-method html scl-pcaRes-method html scores-pcaRes-method html scores.pcaRes html show-methods html showNniRes html simpleEllipse html slplot-pcaRes-method html sortFeatures html summary html svdImpute html svdPca html tempFixNas html vector2matrices-matrix-method html vector2matrices-nlpcaNet-method html wasna-pcaRes-method html weightsAccount html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'pcaMethods' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c nipals.cpp -o nipals.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'pcaMethods' as pcaMethods_1.76.0.zip * DONE (pcaMethods) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'pcaMethods' successfully unpacked and MD5 sums checked