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BUILD report for pRoloc on merida2

This page was generated on 2019-04-09 13:27:45 -0400 (Tue, 09 Apr 2019).

Package 1234/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRoloc 1.23.2
Laurent Gatto
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/pRoloc
Branch: master
Last Commit: 12e9698
Last Changed Date: 2019-03-15 05:37:41 -0400 (Fri, 15 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: pRoloc
Version: 1.23.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc
StartedAt: 2019-04-08 20:29:43 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:37:01 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 438.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc
###
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* checking for file ‘pRoloc/DESCRIPTION’ ... OK
* preparing ‘pRoloc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
sh: line 1: 15024 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plotdist1-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plotdist1-1.png' > /dev/null
sh: line 1: 15062 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/dendro-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/dendro-1.png' > /dev/null
sh: line 1: 15143 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plotavrprof-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plotavrprof-1.png' > /dev/null
sh: line 1: 15162 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plot2d-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plot2d-1.png' > /dev/null
sh: line 1: 15175 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plot2dorg-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plot2dorg-1.png' > /dev/null
sh: line 1: 15216 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/scree-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/scree-1.png' > /dev/null
sh: line 1: 15260 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plotfoi-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plotfoi-1.png' > /dev/null
sh: line 1: 15329 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/qsep-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/qsep-1.png' > /dev/null
sh: line 1: 15331 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/qsep-2.png' -trim 'v01-pRoloc-tutorial_files/figure-html/qsep-2.png' > /dev/null
sh: line 1: 15515 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plot2dnull-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plot2dnull-1.png' > /dev/null
sh: line 1: 15735 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plotKmeans-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plotKmeans-1.png' > /dev/null
sh: line 1: 15828 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plotHclust-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plotHclust-1.png' > /dev/null
sh: line 1: 15860 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/plotPam-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/plotPam-1.png' > /dev/null
sh: line 1: 15943 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/params-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/params-1.png' > /dev/null
sh: line 1: 15945 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/params-2.png' -trim 'v01-pRoloc-tutorial_files/figure-html/params-2.png' > /dev/null
sh: line 1: 16003 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/predscores-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/predscores-1.png' > /dev/null
sh: line 1: 16110 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/svmres-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/svmres-1.png' > /dev/null
sh: line 1: 16230 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/pdres-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/pdres-1.png' > /dev/null
sh: line 1: 16505 Abort trap: 6           'convert' 'v01-pRoloc-tutorial_files/figure-html/pdres2-1.png' -trim 'v01-pRoloc-tutorial_files/figure-html/pdres2-1.png' > /dev/null
Warning: The label(s) fig:params not found
Warning: The label(s) fig:params not found
Warning in lapply(X = X, FUN = FUN, ...) :
  NaNs found in 'precision' with hyperparameters cost:4 sigma:1.
Warning in lapply(X = X, FUN = FUN, ...) :
  NaNs found in 'precision' with hyperparameters cost:16 sigma:1.
Warning in lapply(X = X, FUN = FUN, ...) :
  NaNs found in 'precision' with hyperparameters cost:4 sigma:1.
Warning in lapply(X = X, FUN = FUN, ...) :
  NaNs found in 'precision' with hyperparameters cost:8 sigma:0.1.
Warning in lapply(X = X, FUN = FUN, ...) :
  NaNs found in 'precision' with hyperparameters cost:1 sigma:1.
Warning in lapply(X = X, FUN = FUN, ...) :
  NaNs found in 'precision' with hyperparameters cost:8 sigma:0.1.
Quitting from lines 117-119 (v04-pRoloc-goannotations.Rmd) 
Error: processing vignette 'v04-pRoloc-goannotations.Rmd' failed with diagnostics:
biomaRt error: looks like we're connecting to incompatible version of BioMart suite.
Execution halted