Simon Dirmeier
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/netReg |
| Branch: RELEASE_3_9 |
| Last Commit: 03e580f |
| Last Changed Date: 2019-05-02 11:54:06 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:59:53 -0400 (Wed, 16 Oct 2019).
| Package 1099/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| netReg 1.8.0 Simon Dirmeier
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: netReg |
| Version: 1.8.0 |
| Command: rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh netReg_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R netReg.buildbin-libdir |
| StartedAt: 2019-10-16 09:02:30 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 09:05:00 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 149.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: netReg_1.8.0.tgz |
| PackageFileSize: 2.733 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh netReg_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R netReg.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=netReg.buildbin-libdir netReg_1.8.0.tar.gz' >>>>>>> * installing *source* package ‘netReg’ ... ** using staged installation configure: R home found in /Library/Frameworks/R.framework/Resources configure: setting CXX to clang++ -std=gnu++11 checking whether configure should try to set CXXFLAGS... no checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ -std=gnu++11 accepts -g... yes checking for a sed that does not truncate output... /usr/bin/sed checking for ranlib... ranlib checking for library containing cblas_dgemm... no configure: using rblas checking whether clang++ -std=gnu++11 supports C++11 features by default... yes checking for clang++ -std=gnu++11 option to support OpenMP... unsupported configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h config.status: src/config.h is unchanged Have fun with: netReg CXX: clang++ -std=gnu++11 CXXFLAGS: -Wall -g -O2 CPPFLAGS: -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c cv_set.cpp -o cv_set.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c data_factory.cpp -o data_factory.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c edgenet.cpp -o edgenet.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c edgenet_model_selection.cpp -o edgenet_model_selection.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c edgenet_wrapper.cpp -o edgenet_wrapper.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c graph_functions.cpp -o graph_functions.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c graph_model_cv_data.cpp -o graph_model_cv_data.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c netReg_wrapper.cpp -o netReg_wrapper.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c stat_functions.cpp -o stat_functions.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSE_RCPPARMADILLO -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c vector_functions.cpp -o vector_functions.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o netReg.so cv_set.o data_factory.o edgenet.o edgenet_model_selection.o edgenet_wrapper.o graph_functions.o graph_model_cv_data.o netReg_wrapper.o stat_functions.o vector_functions.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/netReg.buildbin-libdir/00LOCK-netReg/00new/netReg/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (netReg) >>>>>>> >>>>>>> FIXING LINKS FOR netReg.buildbin-libdir/netReg/libs//netReg.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "netReg.buildbin-libdir/netReg/libs//netReg.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "netReg.buildbin-libdir/netReg/libs//netReg.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "netReg.buildbin-libdir/netReg/libs//netReg.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "netReg.buildbin-libdir/netReg/libs//netReg.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "netReg.buildbin-libdir/netReg/libs//netReg.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "netReg.buildbin-libdir/netReg/libs//netReg.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "netReg.buildbin-libdir/netReg/libs//netReg.so"