| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:38:34 -0400 (Wed, 16 Oct 2019).
| Package 1090/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ndexr 1.6.1 Florian Auer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK |
| Package: ndexr |
| Version: 1.6.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ndexr_1.6.1.tar.gz && rm -rf ndexr.buildbin-libdir && mkdir ndexr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ndexr.buildbin-libdir ndexr_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ndexr_1.6.1.zip && rm ndexr_1.6.1.tar.gz ndexr_1.6.1.zip |
| StartedAt: 2019-10-15 19:41:44 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:42:54 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 70.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ndexr_1.6.1.tar.gz && rm -rf ndexr.buildbin-libdir && mkdir ndexr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ndexr.buildbin-libdir ndexr_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ndexr_1.6.1.zip && rm ndexr_1.6.1.tar.gz ndexr_1.6.1.zip
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install for i386
* installing *source* package 'ndexr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ndexr'
finding HTML links ... done
listToRCode html
ndex_conf_header html
ndex_config html
ndex_connect html
ndex_create_group html
ndex_create_network html
ndex_create_user html
ndex_delete_group html
ndex_delete_network html
ndex_delete_user html
ndex_find_groups html
ndex_find_networks html
ndex_find_user_byId html
ndex_find_user_byName html
ndex_find_users html
ndex_get_group html
ndex_get_network html
ndex_group_delete_membership html
ndex_group_list_networks html
ndex_group_list_users html
ndex_group_network_get_permission html
ndex_group_set_membership html
ndex_helper_encodeParams html
ndex_helper_getApi html
ndex_helper_httpResponseHandler html
ndex_internal_addAspects html
ndex_network_aspect_get_metadata html
ndex_network_delete_permission html
ndex_network_get_aspect html
ndex_network_get_metadata html
ndex_network_get_permission html
ndex_network_get_provenance html
ndex_network_get_summary html
ndex_network_set_systemProperties html
ndex_network_update_aspect html
ndex_network_update_permission html
ndex_network_update_profile html
ndex_rest_DELETE html
ndex_rest_GET html
ndex_rest_POST html
ndex_rest_PUT html
ndex_update_group html
ndex_update_network html
ndex_update_user html
ndex_user_change_password html
ndex_user_forgot_password html
ndex_user_get_networksummary html
ndex_user_get_showcase html
ndex_user_list_groups html
ndex_user_list_permissions html
ndex_user_mail_password html
ndex_user_show_group html
ndex_user_show_permission html
ndex_verify_user html
ndexr-package html
ngraph_toRCX html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/ngraph_toRCX.Rd:153: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
print.NDExConnection html
print.RCX html
rcx_asNewNetwork html
rcx_aspect_toJSON html
rcx_fromJSON html
rcx_new html
rcx_toJSON html
rcx_toNGraph html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toNGraph.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toNGraph.Rd:163: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
rcx_toRCXgraph html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toRCXgraph.Rd:31: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toRCXgraph.Rd:148: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
rcx_updateMetaData html
rcxgraph_toRCX html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcxgraph_toRCX.Rd:132: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ndexr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ndexr' as ndexr_1.6.1.zip
* DONE (ndexr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ndexr' successfully unpacked and MD5 sums checked