Arie Zackay
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/methVisual |
| Branch: RELEASE_3_9 |
| Last Commit: d842367 |
| Last Changed Date: 2019-05-02 11:53:13 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:23:19 -0400 (Wed, 16 Oct 2019).
| Package 976/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methVisual 1.36.0 Arie Zackay
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: methVisual |
| Version: 1.36.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:methVisual.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings methVisual_1.36.0.tar.gz |
| StartedAt: 2019-10-16 05:07:18 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 05:09:23 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 125.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: methVisual.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:methVisual.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings methVisual_1.36.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/methVisual.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'methVisual/DESCRIPTION' ... OK
* this is package 'methVisual' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'methVisual' can be installed ... WARNING
Found the following significant warnings:
Note: possible error in 'windows(n, lengthData, ': unused argument (rescale = "fixed")
See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/methVisual.Rcheck/00install.out' for details.
Information on the location(s) of code generating the 'Note's can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to 'yes'.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'Biostrings' 'grid'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'gsubfn' 'plotrix' 'sqldf'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Cooccurrence: no visible global function definition for 'windows'
makeDataMethGFF: no visible binding for global variable 'fn'
plotMatrixSNP: no visible global function definition for 'color.legend'
Undefined global functions or variables:
color.legend fn windows
Consider adding
importFrom("grDevices", "windows")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/methVisual.Rcheck/00check.log'
for details.
methVisual.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/methVisual_1.36.0.tar.gz && rm -rf methVisual.buildbin-libdir && mkdir methVisual.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methVisual.buildbin-libdir methVisual_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL methVisual_1.36.0.zip && rm methVisual_1.36.0.tar.gz methVisual_1.36.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 24255 100 24255 0 0 151k 0 --:--:-- --:--:-- --:--:-- 157k
install for i386
* installing *source* package 'methVisual' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'windows(n, lengthData, ': unused argument (rescale = "fixed")
** help
*** installing help indices
converting help for package 'methVisual'
finding HTML links ... done
Cooccurrence html
MethAlignNW html
MethDataInput html
MethLollipops html
MethylQC html
cgInAlign html
cgMethFinder html
coversionGenom html
findNonAligned html
heatMapMeth html
makeDataMethGFF html
makeLocalExpDir html
makeTabFilePath html
matrixSNP html
methCA html
methData html
methFisherTest html
methWhitneyUTest html
plotAbsMethyl html
plotMatrixSNP html
readBisulfFASTA html
selectRefSeq html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'methVisual' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methVisual' as methVisual_1.36.0.zip
* DONE (methVisual)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'methVisual' successfully unpacked and MD5 sums checked
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methVisual.Rcheck/examples_i386/methVisual-Ex.timings
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methVisual.Rcheck/examples_x64/methVisual-Ex.timings
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