John R. Stevens
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/metahdep |
| Branch: RELEASE_3_9 |
| Last Commit: de677f3 |
| Last Changed Date: 2019-05-02 11:53:11 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:22:25 -0400 (Wed, 16 Oct 2019).
| Package 965/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| metahdep 1.42.0 John R. Stevens
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: metahdep |
| Version: 1.42.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/metahdep_1.42.0.tar.gz && rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL metahdep_1.42.0.zip && rm metahdep_1.42.0.tar.gz metahdep_1.42.0.zip |
| StartedAt: 2019-10-15 18:42:51 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:43:36 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 45.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/metahdep_1.42.0.tar.gz && rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL metahdep_1.42.0.zip && rm metahdep_1.42.0.tar.gz metahdep_1.42.0.zip
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install for i386
* installing *source* package 'metahdep' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:0:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include/Rinternals.h:510:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast
#define CHAR(x) R_CHAR(x)
^
metahdep.c:471:79: note: in expansion of macro 'CHAR'
index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
^
metahdep.c:372:6: note: expected 'char' but argument is of type 'const char *'
SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'metahdep'
finding HTML links ... done
ES.obj-class html
HGU.DifExp.list html
HGU.newnames html
HGU.prep.list html
getPLM.es html
gloss html
metahdep.FEMA html
metahdep.HBLM html
metahdep.REMA html
metahdep html
metahdep.format html
metahdep.other html
metaprep-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metahdep' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:0:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include/Rinternals.h:510:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast
#define CHAR(x) R_CHAR(x)
^
metahdep.c:471:79: note: in expansion of macro 'CHAR'
index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
^
metahdep.c:372:6: note: expected 'char' but argument is of type 'const char *'
SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/metahdep.buildbin-libdir/metahdep/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metahdep' as metahdep_1.42.0.zip
* DONE (metahdep)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'metahdep' successfully unpacked and MD5 sums checked