Joseph N. Paulson
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/metagenomeSeq |
| Branch: RELEASE_3_9 |
| Last Commit: 8de127d |
| Last Changed Date: 2019-08-04 12:53:02 -0400 (Sun, 04 Aug 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:27:45 -0400 (Wed, 16 Oct 2019).
| Package 964/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| metagenomeSeq 1.26.3 Joseph N. Paulson
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: metagenomeSeq |
| Version: 1.26.3 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/metagenomeSeq_1.26.3.tar.gz && rm -rf metagenomeSeq.buildbin-libdir && mkdir metagenomeSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metagenomeSeq.buildbin-libdir metagenomeSeq_1.26.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL metagenomeSeq_1.26.3.zip && rm metagenomeSeq_1.26.3.tar.gz metagenomeSeq_1.26.3.zip |
| StartedAt: 2019-10-15 19:16:54 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:18:33 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 98.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/metagenomeSeq_1.26.3.tar.gz && rm -rf metagenomeSeq.buildbin-libdir && mkdir metagenomeSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metagenomeSeq.buildbin-libdir metagenomeSeq_1.26.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL metagenomeSeq_1.26.3.zip && rm metagenomeSeq_1.26.3.tar.gz metagenomeSeq_1.26.3.zip
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install for i386
* installing *source* package 'metagenomeSeq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'MRihw' with signature '"fitFeatureModelResults"': no definition for class "fitFeatureModelResults"
in method for 'MRihw' with signature '"fitZigResults"': no definition for class "fitZigResults"
** help
*** installing help indices
converting help for package 'metagenomeSeq'
finding HTML links ... done
MRcoefs html
MRcounts html
MRexperiment-class html
MRexperiment2biom html
MRfulltable html
MRihw-fitFeatureModelResults html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6BNxsQ/R.INSTALLc8833803c53/metagenomeSeq/man/MRihw-fitFeatureModelResults.Rd:16: missing link 'fitFeatureModelResults'
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6BNxsQ/R.INSTALLc8833803c53/metagenomeSeq/man/MRihw-fitFeatureModelResults.Rd:17: missing link 'fitZigResults'
MRihw-fitZigResults html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6BNxsQ/R.INSTALLc8833803c53/metagenomeSeq/man/MRihw-fitZigResults.Rd:16: missing link 'fitFeatureModelResults'
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6BNxsQ/R.INSTALLc8833803c53/metagenomeSeq/man/MRihw-fitZigResults.Rd:17: missing link 'fitZigResults'
MRihw html
MRtable html
aggregateBySample html
aggregateByTaxonomy html
biom2MRexperiment html
calcNormFactors html
calcPosComponent html
calcShrinkParameters html
calcStandardError html
calcZeroAdjustment html
calcZeroComponent html
calculateEffectiveSamples html
correctIndices html
correlationTest html
cumNorm html
cumNormMat html
cumNormStat html
cumNormStatFast html
doCountMStep html
doEStep html
doZeroMStep html
expSummary html
exportMat html
exportStats html
extractMR html
filterData html
fitDO html
fitFeatureModel html
fitFeatureModelResults-class html
fitLogNormal html
fitMultipleTimeSeries html
fitPA html
fitSSTimeSeries html
fitTimeSeries html
fitZeroLogNormal html
fitZig html
fitZigResults-class html
getCountDensity html
getEpsilon html
getNegativeLogLikelihoods html
getPi html
getZ html
isItStillActive html
libSize-set html
libSize html
loadBiom html
loadMeta html
loadMetaQ html
loadPhenoData html
lungData html
makeLabels html
mergeMRexperiments html
mergeTable html
metagenomeSeq-deprecated html
metagenomeSeq-package html
mouseData html
newMRexperiment html
normFactors-set html
normFactors html
plotBubble html
plotClassTimeSeries html
plotCorr html
plotFeature html
plotGenus html
plotMRheatmap html
plotOTU html
plotOrd html
plotRare html
plotTimeSeries html
posteriorProbs html
returnAppropriateObj html
ssFit html
ssIntervalCandidate html
ssPerm html
ssPermAnalysis html
trapz html
ts2MRexperiment html
uniqueFeatures html
wrenchNorm html
zigControl html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metagenomeSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metagenomeSeq' as metagenomeSeq_1.26.3.zip
* DONE (metagenomeSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'metagenomeSeq' successfully unpacked and MD5 sums checked